erccdashboard (version 1.6.0)

erccROC: Produce Receiver Operator Characteristic (ROC) Curves and AUC statistics

Description

Produce Receiver Operator Characteristic (ROC) Curves and AUC statistics

Usage

erccROC(exDat)

Arguments

exDat

list, contains input data and stores analysis results

Examples

data(SEQC.Example)

exDat <- initDat(datType="array", isNorm=FALSE,
                 exTable=UHRR.HBRR.arrayDat,
                 filenameRoot="testRun", sample1Name="UHRR",
                 sample2Name="HBRR", erccmix="RatioPair",
                 erccdilution = 1, spikeVol = 50,
                 totalRNAmass = 2.5*10^(3), choseFDR=0.01)

exDat <- est_r_m(exDat)

exDat <- dynRangePlot(exDat)

exDat <- geneExprTest(exDat)

exDat <- erccROC(exDat)

exDat$Figures$rocPlot