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ergm (version 4.9.0)

Fit, Simulate and Diagnose Exponential-Family Models for Networks

Description

An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) and Krivitsky, Hunter, Morris, and Klumb (2023) .

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Install

install.packages('ergm')

Monthly Downloads

6,396

Version

4.9.0

License

GPL-3 + file LICENSE

Maintainer

Pavel N. Krivitsky

Last Published

June 10th, 2025

Functions in ergm (4.9.0)

Dyads-ergmConstraint

Constrain fixed or varying dyad-independent terms

CondOutDegreeDist-ergmProposal

MHp for odegreedist constraints

DiscUnif-ergmReference

Discrete Uniform reference

Impose a curved structure on term parameters

HammingTNT-ergmProposal

NodematchFilter-ergmTerm

Filtering on nodematch

Take a natural logarithm of a network's statistic

Exponentiate a network's statistic

Filtering on arbitrary one-term model

StdNormal-ergmProposal

Modify terms' coefficient names

A sum (or an arbitrary linear combination) of one or more formulas

A for operator for terms

StdNormal-ergmReference

Standard Normal reference

HammingConstantEdges-ergmProposal

SPDyad-ergmProposal

A proposal alternating between TNT and a triad-focused proposal

Offset-ergmTerm

Terms with fixed coefficients

Symmetrize-ergmTerm

Evaluation on symmetrized (undirected) network

Unif-ergmReference

Continuous Uniform reference

A product (or an arbitrary power combination) of one or more formulas

UnifNonObserved-ergmProposal

Unif-ergmProposal

TNT-ergmProposal

Default MH algorithm

absdiffcat-ergmTerm

Categorical absolute difference in nodal attribute

altkstar-ergmTerm

Alternating \(k\)-star

atleast-ergmTerm

Number of dyads with values greater than or equal to a threshold

asymmetric-ergmTerm

Asymmetric dyads

ANOVA for ERGM Fits

Project-ergmTerm

Evaluation on a projection of a bipartite network

atmost-ergmTerm

Number of dyads with values less than or equal to a threshold

attrcov-ergmTerm

Edge covariate by attribute pairing

approx.hotelling.diff.test

Approximate Hotelling T^2-Test for One or Two Population Means

absdiff-ergmTerm

Absolute difference in nodal attribute

b1degrees-ergmConstraint

Preserve the actor degree for bipartite networks

b1twostar-ergmTerm

Two-star census for central nodes centered on the first mode of a bipartite network

b1degree-ergmTerm

Degree for the first mode in a bipartite network

Dyadwise shared partners for dyads in the first bipartition

Evaluation on an induced subgraph

as.rlebdm.ergm_conlist

Extract dyad-level ERGM constraint information into an rlebdm object

as.network.numeric

Create a Simple Random network of a Given Size

b1mindegree-ergmTerm

Minimum degree for the first mode in a bipartite network

b1factordistinct-ergmTerm

Number of distinct neighbor types for the first node

Main effect of a covariate for the first mode in a bipartite network

b1concurrent-ergmTerm

Concurrent node count for the first mode in a bipartite network

b1star-ergmTerm

\(k\)-stars for the first mode in a bipartite network

b2concurrent-ergmTerm

Concurrent node count for the second mode in a bipartite network

b1starmix-ergmTerm

Mixing matrix for \(k\)-stars centered on the first mode of a bipartite network

b2nodematch-ergmTerm

Nodal attribute-based homophily effect for the second mode in a bipartite network

b2mindegree-ergmTerm

Minimum degree for the second mode in a bipartite network

b1factor-ergmTerm

Factor attribute effect for the first mode in a bipartite network

b2degree-ergmTerm

Degree for the second mode in a bipartite network

b2degrange-ergmTerm

Degree range for the second mode in a bipartite network

balance-ergmTerm

Balanced triads

b2degrees-ergmConstraint

Preserve the receiver degree for bipartite networks

Dyadwise shared partners for dyads in the second bipartition

Locate and call an ERGM term initialization function.

bd-ergmConstraint

Constrain maximum and minimum vertex degree

b2factor-ergmTerm

Factor attribute effect for the second mode in a bipartite network

b2factordistinct-ergmTerm

Number of distinct neighbor types for the second mode

Target statistics and model fit to a hypothetical 50,000-node network population with 50,000 nodes based on egocent

coincidence-ergmTerm

Coincident node count for the second mode in a bipartite (aka two-mode) network

b1degrange-ergmTerm

Degree range for the first mode in a bipartite network

b2covrange-ergmTerm

Range of covariate values for neighbors of a mode-2 node

b1covrange-ergmTerm

Range of covariate values for neighbors of a mode-1 node

Main effect of a covariate for the second mode in a bipartite network

Ensures an Ergm Term and its Arguments Meet Appropriate Conditions

b1nodematch-ergmTerm

Nodal attribute-based homophily effect for the first mode in a bipartite network

b1sociality-ergmTerm

b2sociality-ergmTerm

b2starmix-ergmTerm

Mixing matrix for \(k\)-stars centered on the second mode of a bipartite network

b2star-ergmTerm

\(k\)-stars for the second mode in a bipartite network

blockdiag-ergmConstraint

Block-diagonal structure constraint

blocks-ergmConstraint

Constrain blocks of dyads defined by mixing type on a vertex attribute.

concurrent-ergmTerm

Concurrent node count

concurrentties-ergmTerm

Concurrent tie count

Auxiliary for Controlling ERGM Goodness-of-Fit Evaluation

Computes and Returns the Degree Distribution Information for a Given Network

degreedist-ergmConstraint

Preserve the degree distribution of the given network

cyclicalweights-ergmTerm

Cyclical weights

Auxiliary for Controlling SAN

degcor-ergmTerm

Degree Correlation

degree-ergmTerm

degree1.5-ergmTerm

Degree to the 3/2 power

cyclicalties-ergmTerm

edgecov-ergmTerm

b2twostar-ergmTerm

Two-star census for central nodes centered on the second mode of a bipartite network

dyadcov-ergmTerm

Dyadic covariate

Auxiliary function for fine-tuning ERGM fitting.

degrange-ergmTerm

degcrossprod-ergmTerm

Degree Cross-Product

ctriple-ergmTerm

.dyads-ergmConstraint

A meta-constraint indicating handling of arbitrary dyadic constraints

edges-ergmConstraint

Preserve the edge count of the given network

control.simulate.ergm

Auxiliary for Controlling ERGM Simulation

control.ergm.bridge

Auxiliaries for Controlling ergm.bridge.llr() and logLik.ergm()

dyadnoise-ergmConstraint

A soft constraint to adjust the sampled distribution for dyad-level noise with known perturbation probabilities

density-ergmTerm

degrees-ergmConstraint

Preserve the degree of each vertex of the given network

dyadnoiseTNT-ergmProposal

Two versions of an E. Coli network dataset

dyadnoise-ergmProposal

Directed dyadwise shared partners

Internal ergm Objects

Sensible error and warning messages by ergm initializers

enformulate.curved-deprecated

Convert a curved ERGM into a form suitable as initial values for the same ergm. Deprecated in 4.0.0.

Global options and term options for the ergm package

ergm: Fit, Simulate and Diagnose Exponential-Family Models for Networks

Functions that have been removed from this package

ergm-deprecated

Functions that will no longer be supported in future releases of the package

Number of edges in the network

egocentric-ergmConstraint

Preserve values of dyads incident on vertices with given attribute

Obtain the set of informative dyads based on the network structure.

Parallel Processing in the ergm Package

Operations to map curved ergm() parameters onto canonical parameters

Calculate all possible vectors of statistics on a network for an ERGM

Compute the Sample Estimating Function Values of an ERGM.

Exponential-Family Random Graph Models

ergm.bridge.llr

Bridge sampling to evaluate ERGM log-likelihoods and log-likelihood ratios

equalto-ergmTerm

Number of dyads with values equal to a specific value (within tolerance)

ergm.getnetwork

Acquire and verify the network from the LHS of an ergm formula and verify that it is a valid network.

A function to apply a given series of changes to a network.

Metropolis-Hastings Proposal Methods for ERGM MCMC

ergm.geodistdist

Calculate geodesic distance distribution for a network or edgelist

MCMC Hints for Exponential-Family Random Graph Models

Keywords defined for Exponential-Family Random Graph Models

Sample Space Constraints for Exponential-Family Random Graph Models

Terms used in Exponential Family Random Graph Models

Auxiliaries to Facilitate Terms in Exponential Family Random Graph Models

ergm_Cstate_clear

Deallocate the C data structures corresponding to an ergm_state left over from a .Call() run.

Reference Measures for Exponential-Family Random Graph Models

Curved settings for geometric weights for the gw* terms

Find a maximizer to the psuedolikelihood function

ERGM Predictors and response for logistic regression calculation of MPLE

ergm_MCMC_sample

Internal Function to Sample Networks and Network Statistics

Dynamic ERGM keyword registry

ergm_mk_std_op_namewrap

Combine an operator term's and a subterm's name in a standard fashion.

ergm_dyadgen_select

A helper function to select and construct a dyad generator for C.

Internal representation of an ergm network model

ergm_cutoff_message

Helper function for constructing gw* cutoff error messages

ergm_edgecov_args

A common pattern for obtaining an edge covariate

Initializes the parameters to bound degree during sampling

Internal Function to Perform Simulated Annealing

ergm_state_cache

A rudimentary cache for large objects

ergm_symmetrize

Return a symmetrized version of a binary network

ergm_propagate_ext.encode

Extended states for submodels

Functions to initialize the ergm_proposal object

ergm_plot.mcmc.list

Plot MCMC list using lattice package graphics

ergm_preprocess_response

Update the network and the response argument.

ergm_proposal_table

Table mapping reference,constraints, etc. to ERGM Metropolis-Hastings proposals

A Representation of ERGM state

Goodreau's four node network as a "network" object

Directed edgewise shared partners

Retrieve and check assumptions about vertex attributes (nodal covariates) in a network

An API for specifying aspects of an ergm model in the LHS/basis network.

faux.dixon.high

Faux dixon High School as a network object

fixedas-ergmConstraint

Fix specific dyads

Florentine Family Marriage and Business Ties Data as a "network" object

faux.desert.high

Faux desert High School as a network object

Goodreau's Faux Mesa High School as a network object

faux.magnolia.high

Goodreau's Faux Magnolia High School as a network object

greaterthan-ergmTerm

Number of dyads with values strictly greater than a threshold

gwb1degree-ergmTerm

Geometrically weighted degree distribution for the first mode in a bipartite network

gwdegree-ergmTerm

Geometrically weighted degree distribution

gwb2dsp-ergmTerm

Geometrically weighted dyadwise shared partner distribution for dyads in the second bipartition

hamming-ergmTerm

Hamming distance

idegrange-ergmTerm

In-degree range

Geometrically weighted edgewise shared partner distribution

idegree1.5-ergmTerm

In-degree to the 3/2 power

Geometrically weighted dyadwise shared partner distribution

idegree-ergmTerm

idegreedist-ergmConstraint

Preserve the indegree distribution

gwb1dsp-ergmTerm

Geometrically weighted dyadwise shared partner distribution for dyads in the first bipartition

Kapferer's tailor shop data

gwb2degree-ergmTerm

Geometrically weighted degree distribution for the second mode in a bipartite network

idegrees-ergmConstraint

Preserve indegree for directed networks

hamming-ergmConstraint

Preserve the hamming distance to the given network (BROKEN: Do NOT Use)

isolates-ergmTerm

gwodegree-ergmTerm

Geometrically weighted out-degree distribution

Convert a curved ERGM into a corresponding "fixed" ERGM.

fixallbut-ergmConstraint

Preserve the dyad status in all but the given edges

Multivariate version of coda's coda::geweke.diag().

Testing for curved exponential family

Conduct Goodness-of-Fit Diagnostics on a Exponential Family Random Graph Model

is.dyad.independent

Testing for dyad-independence

Function to check whether an ERGM fit or some aspect of it is valued

isolatededges-ergmTerm

gwidegree-ergmTerm

Geometrically weighted in-degree distribution

intransitive-ergmTerm

Intransitive triads

ininterval-ergmTerm

Number of dyads whose values are in an interval

Geometrically weighted non-edgewise shared partner distribution

nearsimmelian-ergmTerm

Near simmelian triads

Mixing matrix cells and margins

mcmc.diagnostics

Conduct MCMC diagnostics on a model fit

localtriangle-ergmTerm

Triangles within neighborhoods

Calculate the null model likelihood

mutual-ergmTerm

Synthetic network with 20 nodes and 28 edges

meandeg-ergmTerm

Mean vertex degree

A logLik() method for ergm fits.

nodecovrange-ergmTerm

Range of covariate values for neighbors of a node

m2star-ergmTerm

Mixed 2-stars, a.k.a 2-paths

nodeicovar-ergmTerm

Covariance of in-dyad values incident on each actor

nodecovar-ergmTerm

Covariance of undirected dyad values incident on each actor

nodecov-ergmTerm

Main effect of a covariate

nodal_attributes

Specifying nodal attributes and their levels

nodeicov-ergmTerm

Main effect of a covariate for in-edges

nodefactor-ergmTerm

Factor attribute effect

A convenience container for a list of network objects, output by simulate.ergm() among others.

nodefactordistinct-ergmTerm

Number of distinct neighbor types

nodal_attributes-API

Helper functions for specifying nodal attribute levels

nodeocovar-ergmTerm

Covariance of out-dyad values incident on each actor

nodemix-ergmTerm

Nodal attribute mixing

nodeifactordistinct-ergmTerm

Number of distinct in-neighbor types

nodeicovrange-ergmTerm

Range of covariate values for in-neighbors of a node

nodeifactor-ergmTerm

Factor attribute effect for in-edges

nodematch-ergmTerm

Uniform homophily and differential homophily

odegree-ergmTerm

nodeocov-ergmTerm

Main effect of a covariate for out-edges

odegrange-ergmTerm

Out-degree range

observed-ergmConstraint

Preserve the observed dyads of the given network

odegrees-ergmConstraint

Preserve outdegree for directed networks

opentriad-ergmTerm

nvattr.copy.network

Copy network- and vertex-level attributes between two network objects

odegree1.5-ergmTerm

Out-degree to the 3/2 power

odegreedist-ergmConstraint

Preserve the outdegree distribution

nodeofactordistinct-ergmTerm

Number of distinct out-neighbor types

nodeofactor-ergmTerm

Factor attribute effect for out-edges

nodeocovrange-ergmTerm

Range of covariate values for out-neighbors of a node

Length of the parameter vector associated with an object or with its terms.

predict.formula

ERGM-based tie probabilities

Directed non-edgewise shared partners

Names of the parameters associated with an object.

Cumulative network of positive affection within a monastery as a "network" object

A lack-of-fit test for ERGMs

receiver-ergmTerm

Receiver effect

Generate networks with a given set of network statistics

simmelianties-ergmTerm

Ties in simmelian triads

randomtoggle-ergmProposal

Propose a randomly selected dyad to toggle

Draw from the distribution of an Exponential Family Random Graph Model

search.ergmTerms

Search ERGM terms, constraints, references, hints, and proposals

sender-ergmTerm

simmelian-ergmTerm

Simmelian triads

Identify the position of a point relative to the convex hull of a set of points

smalldiff-ergmTerm

Number of ties between actors with similar attribute values

simulate.formula

A simulate Method for formula objects that dispatches based on the Left-Hand Side

Summarizing ERGM Model Fits

summary.ergm_model

Evaluate network summary statistics from an initialized ergm model

Sum of dyad values (optionally taken to a power)

Stratify Proposed Toggles by Mixing Type on a Vertex Attribute

RLE-Compressed Boolean Dyad Matrix

Longitudinal networks of positive affection within a monastery as a "network" object

transitiveties-ergmTerm

Transitive ties

sociality-ergmTerm

Undirected degree

sparse-ergmHint

transitive-ergmTerm

Transitive triads

transitiveweights-ergmTerm

Transitive weights

triadcensus-ergmTerm

twopath-ergmTerm

Update the edges in a network based on a matrix

ttriple-ergmTerm

Transitive triples

tripercent-ergmTerm

Triangle percentage

wrap.ergm_model

Wrap a submodel's curved, empty network statistics, and extended state (read-only) specification (if present) for output from an InitErgmTerm or InitWtErgmTerm.

Statnet Control

smallerthan-ergmTerm

Number of dyads with values strictly smaller than a threshold

triadic-ergmHint

Network with strong clustering (triad-closure) effects

triangle-ergmTerm

summary.formula

Calculation of network or graph statistics or other attributes specified on a formula

Weighted Median

summary_formula

Dispatching a summary function based on the class of the LHS of a formula.

threetrail-ergmTerm

Multivariate version of coda's spectrum0.ar().

.spcache.net-ergmAuxiliary

Shared Partner Cache

to_ergm_Cdouble

Methods to serialize objects into numeric vectors for passing to the C side.

CondB2Degree-ergmProposal

MHp for b2degree constraints

Wrap binary terms for use in valued models

Bernoulli-ergmReference

Bernoulli reference

CondDegree-ergmProposal

MHp for degree constraints

CondDegreeMix-ergmProposal

MHp for degree mix constraints

CondInDegree-ergmProposal

MHp for idegree constraints

CondInDegreeDist-ergmProposal

MHp for idegreedist constraints

CondB1Degree-ergmProposal

MHp for b1degree constraints

CondDegreeDist-ergmProposal

MHp for degreedist constraints

DiscUnif2-ergmProposal

DiscUnifNonObserved-ergmProposal

CondOutDegree-ergmProposal

MHp for odegree constraints

DistRLE-ergmProposal

ConstantEdges-ergmProposal

MHp for edges constraints

DiscUnif-ergmProposal

BDStratTNT-ergmProposal

TNT proposal with degree bounds, stratification, and a blocks constraint