ern (version 2.1.2)

reports_to_incidence: Infer incidence from reports via a series of deconvolutions

Description

Infer incidence from reports via a series of deconvolutions

Usage

reports_to_incidence(
  reports.daily,
  reporting.delay,
  incubation.period,
  max.iter = 9,
  silent = FALSE
)

Arguments

reports.daily

Data frame. Daily report counts. Includes at least date and value columns.

reporting.delay

List. Parameters for a single reporting delay distribution, as generated by sample_a_dist().

incubation.period

List. Parameters for a single incubation period distribution, as generated by sample_a_dist().

max.iter

Numeric. Maximum number of Richardson-Lucy iterations.

silent

Logical. Flag to suppress all output messages, warnings, and progress bars.