escalation (version 0.1.10)

prob_tox_exceeds: Probability that the toxicity rate exceeds some threshold.

Description

Get the probability that the toxicity rate at each dose exceeds some threshold.

Get the probability that the efficacy rate at each dose exceeds some threshold.

Usage

prob_tox_exceeds(x, threshold, ...)
prob_eff_exceeds(x, threshold, ...)

Value

numerical vector of probabilities

numerical vector of probabilities

Arguments

x

Object of type selector

threshold

Probability that efficacy rate exceeds what?

...

arguments passed to other methods

Examples

# CRM example
skeleton <- c(0.05, 0.1, 0.25, 0.4, 0.6)
target <- 0.25
outcomes <- '1NNN 2NTN'
fit <- get_dfcrm(skeleton = skeleton, target = target) %>% fit(outcomes)
# What is probability that tox rate at each dose exceeds target by >= 10%?
fit %>% prob_tox_exceeds(threshold = target + 0.1)
efftox_priors <- trialr::efftox_priors
p <- efftox_priors(alpha_mean = -7.9593, alpha_sd = 3.5487,
                   beta_mean = 1.5482, beta_sd = 3.5018,
                   gamma_mean = 0.7367, gamma_sd = 2.5423,
                   zeta_mean = 3.4181, zeta_sd = 2.4406,
                   eta_mean = 0, eta_sd = 0.2,
                   psi_mean = 0, psi_sd = 1)
real_doses = c(1.0, 2.0, 4.0, 6.6, 10.0)
model <- get_trialr_efftox(real_doses = real_doses,
                           efficacy_hurdle = 0.5, toxicity_hurdle = 0.3,
                           p_e = 0.1, p_t = 0.1,
                           eff0 = 0.5, tox1 = 0.65,
                           eff_star = 0.7, tox_star = 0.25,
                           priors = p, iter = 1000, chains = 1, seed = 2020)
x <- model %>% fit('1N 2E 3B')
prob_tox_exceeds(x, threshold = 0.45)