diffGenera


Differential microbes in Genus-Species table
A data frame containing 10 differential genera and the species included, which was to be annotated as <code>"harmful"</code> or <code>"harmless"</code>.


datasets

eudysbiome a package that permits to annotate the differential
genera as harmful/harmless based on their ability to contribute to host
diseases (as indicated in literature) or unknown based on their ambiguous
genus classification. Further, the package statistically measures the eubiotic
(harmless genera increase or harmful genera decrease) or dysbiotic(harmless
genera decrease or harmful genera increase) impact of a given treatment or
environmental change on the (gut-intestinal, GI) microbiome in comparison to the
microbiome of the reference condition.

Xiaoyuan Zhou

eudysbiome

Cartesian plot and contingency test on 16S Microbial data

diffGenera function

A data frame with 26 rows and 2 columns specifying for <code>Genus</code> and <code>Species</code>.

Format

Differential microbes in Genus-Species table
A data frame containing 10 differential genera and the species included, which was to be annotated as <code>"harmful"</code> or <code>"harmless"</code>.

diffGenera: Differential microbes in Genus-Species table A data frame containing 10 differential genera and the species included, which was to be annotated as `"harmful"` or `"harmless"`.

Description

Usage

Arguments

Format