harmGenera


Manually curated genera annotation table
A data frame containing 235 genera annotated as "harmful" and the harmful species included in these genera.


datasets

eudysbiome a package that permits to annotate the differential
genera as harmful/harmless based on their ability to contribute to host
diseases (as indicated in literature) or unknown based on their ambiguous
genus classification. Further, the package statistically measures the eubiotic
(harmless genera increase or harmful genera decrease) or dysbiotic(harmless
genera decrease or harmful genera increase) impact of a given treatment or
environmental change on the (gut-intestinal, GI) microbiome in comparison to the
microbiome of the reference condition.

Xiaoyuan Zhou

eudysbiome

Cartesian plot and contingency test on 16S Microbial data

harmGenera function

A data frame with 851 rows and 3 columns specifying for <code>Genus</code> and <code>Species</code> and the references.

Format

Manually curated genera annotation table
A data frame containing 235 genera annotated as "harmful" and the harmful species included in these genera.

harmGenera: Manually curated genera annotation table A data frame containing 235 genera annotated as "harmful" and the harmful species included in these genera.

Description

Usage

Arguments

Format