microCount


A matrix containing the counts of differential microbe classified into each condition-eubiotic/dysbiotic impact couple. Rows represent the condition comparisons, columns represent the eubiotic and dysbiotic impacts:


datasets

eudysbiome a package that permits to annotate the differential
genera as harmful/harmless based on their ability to contribute to host
diseases (as indicated in literature) or unknown based on their ambiguous
genus classification. Further, the package statistically measures the eubiotic
(harmless genera increase or harmful genera decrease) or dysbiotic(harmless
genera decrease or harmful genera increase) impact of a given treatment or
environmental change on the (gut-intestinal, GI) microbiome in comparison to the
microbiome of the reference condition.

Xiaoyuan Zhou

eudysbiome

Cartesian plot and contingency test on 16S Microbial data

microCount function

Format

A matrix containing the counts of differential microbe classified into each condition-eubiotic/dysbiotic impact couple. Rows represent the condition comparisons, columns represent the eubiotic and dysbiotic impacts:

microCount: Microbial count contingency table

Description

Usage

Arguments

Format

Details