microDiff


A list containing: i) a data frame of 10 differentila genera with abundance differences among 3 condition comparisons, in which row represents the differential microbes and column represents the comparisons; ii) Genera annotations for the 10 differential genera; iii) pre-defined condition comparison names


datasets

eudysbiome a package that permits to annotate the differential
genera as harmful/harmless based on their ability to contribute to host
diseases (as indicated in literature) or unknown based on their ambiguous
genus classification. Further, the package statistically measures the eubiotic
(harmless genera increase or harmful genera decrease) or dysbiotic(harmless
genera decrease or harmful genera increase) impact of a given treatment or
environmental change on the (gut-intestinal, GI) microbiome in comparison to the
microbiome of the reference condition.

Xiaoyuan Zhou

eudysbiome

Cartesian plot and contingency test on 16S Microbial data

microDiff function

Format

A list containing: i) a data frame of 10 differentila genera with abundance differences among 3 condition comparisons, in which row represents the differential microbes and column represents the comparisons; ii) Genera annotations for the 10 differential genera; iii) pre-defined condition comparison names

microDiff: Differential annotated genera with abundance variations among pair-wise condition comparisons

Description

Usage

Arguments

Format