evanverse (version 0.4.0)

gmt2list: gmt2list: Convert GMT File to Named List

Description

Reads a .gmt gene set file and returns a named list, where each list element is a gene set.

Usage

gmt2list(file, verbose = TRUE)

Value

A named list where each element is a character vector of gene symbols.

Arguments

file

Character. Path to a .gmt file.

verbose

Logical. Whether to print message. Default is TRUE.

Examples

if (FALSE) {
# Requires a GMT file to run:
gmt_file <- "path/to/geneset.gmt"
gene_sets <- gmt2list(gmt_file)
length(gene_sets)
names(gene_sets)[1:3]
}