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evobiR (version 1.1)

Comparative and Population Genetic Analyses

Description

Comparative analysis of continuous traits influencing discrete states, and utility tools to facilitate comparative analyses. Implementations of ABBA/BABA type statistics to test for introgression in genomic data. Wright-Fisher, phylogenetic tree, and statistical distribution Shiny interactive simulations for use in teaching.

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Version

Install

install.packages('evobiR')

Monthly Downloads

269

Version

1.1

License

GPL (>= 2)

Maintainer

Heath Blackmon

Last Published

September 6th, 2015

Functions in evobiR (1.1)

creates a supermatrix from multiple gene alignments

Calculate the mean of a continuous character at the origin of derived state of a binary charachter

Calcualtes the mode of a numeric vector

phenotype data for mites

Computes an AICc score

simulated SNP data

Learning Resources

Reorders trait data to match the order of tips in a tree

10 Phylogenetic trees

evobiR: Evolutionary Biology in R

10 Phylogenetic trees

horn.beetle.csv

Gnatocerus measurements

Selection on Residuals

Calculate Patterson's D-statistic in sliding windows

Select a random sample of trees

Sliding window analysis

Tests whether a number is even

Create Simulated Datasets via PPS

Calculate Patterson's D-statistic

Find Close Matches in a tree and dataset

Phylogenetic tree

100 Phylogenetic trees