evolqg (version 0.2-2)

ExtendMatrix: Control Inverse matrix noise with Extension

Description

Calculates the extented covariance matrix estimation as described in Marroig et al. 2012

Usage

ExtendMatrix(cov.matrix, var.cut.off = 1e-04, ret.dim = NULL)

Arguments

cov.matrix

Covariance matrix

var.cut.off

Cut off for second derivative variance. Ignored if ret.dim is passed.

ret.dim

Number of retained eigen values

Value

• Extended covariance matrix and second derivative variance

References

Marroig, G., Melo, D. A. R., and Garcia, G. (2012). Modularity, noise, and natural selection. Evolution; international journal of organic evolution, 66(5), 1506-24. doi:10.1111/j.1558-5646.2011.01555.x

Examples

cov.matrix = RandomMatrix(11, 1, 1, 100)
ext.matrix = ExtendMatrix(cov.matrix, var.cut.off = 1e-6)
ext.matrix = ExtendMatrix(cov.matrix, ret.dim = 6)