F_x.SIP

Provides tools to set up modular ordinary and delay differential equation
models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved
by S3 dispatch on parameter lists for each component which is used to compute
the full set of differential equations which may be solved using
any of the packages for numerical simulation of differential equations in R. The
methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Sean L. Wu

exDE

Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling

David L. Smith

F_x.SIP function

<dl><dt>t</dt>
<dd>current simulation time</dd>
<dt>y</dt>
<dd>state vector</dd>
<dt>pars</dt>
<dd>an <a href="/link/environment?package=exDE&version=1.0.0" data-mini-rdoc="exDE::environment">environment</a></dd></dl>

Arguments

Size of effective infectious human population — F_x.SIP

<dl>

<dt>t</dt>
<dd>current simulation time</dd>


<dt>y</dt>
<dd>state vector</dd>


<dt>pars</dt>
<dd>an <a href='https://rdrr.io/r/base/environment.html'>environment</a></dd>

</dl>

F_x.SIP: Size of effective infectious human population

Description

Usage

Value

Arguments