dMYZdt.RM_ode

Implements dMYZdt for the generalized RM ODE model.

Provides tools to set up modular ordinary and delay differential equation
models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved
by S3 dispatch on parameter lists for each component which is used to compute
the full set of differential equations which may be solved using
any of the packages for numerical simulation of differential equations in R. The
methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Sean L. Wu

exDE

Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling

David L. Smith

dMYZdt.RM_ode function

<dl><dt>t</dt>
<dd>current simulation time</dd>
<dt>y</dt>
<dd>state vector</dd>
<dt>pars</dt>
<dd>an <a href="/link/environment?package=exDE&version=1.0.0" data-mini-rdoc="exDE::environment">environment</a></dd>
<dt>Lambda</dt>
<dd>emergence rate of adult mosquitoes</dd>
<dt>kappa</dt>
<dd>net infectiousness of human population</dd>
<dt>MosyBehavior</dt>
<dd>values returned by MosquitoBehavior, potentially modified by control VectorControl</dd></dl>

Arguments

Derivatives for adult mosquitoes — dMYZdt.RM_ode

<dl>

<dt>t</dt>
<dd>current simulation time</dd>


<dt>y</dt>
<dd>state vector</dd>


<dt>pars</dt>
<dd>an <a href='https://rdrr.io/r/base/environment.html'>environment</a></dd>


<dt>Lambda</dt>
<dd>emergence rate of adult mosquitoes</dd>


<dt>kappa</dt>
<dd>net infectiousness of human population</dd>


<dt>MosyBehavior</dt>
<dd>values returned by MosquitoBehavior, potentially modified by control VectorControl</dd>

</dl>

dMYZdt.RM_ode: Derivatives for adult mosquitoes

Description

Usage

Value

Arguments