make_parameters_vc_lemenach

This model of ITN based vector control was originally described in <a href="https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-6-10">https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-6-10</a>.

Provides tools to set up modular ordinary and delay differential equation
models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved
by S3 dispatch on parameter lists for each component which is used to compute
the full set of differential equations which may be solved using
any of the packages for numerical simulation of differential equations in R. The
methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Sean L. Wu

exDE

Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling

David L. Smith

make_parameters_vc_lemenach function

<dl><dt>pars</dt>
<dd>an <a href="/link/environment?package=exDE&version=1.0.0" data-mini-rdoc="exDE::environment">environment</a></dd>
<dt>tau0_frac</dt>
<dd>a <a href="/link/numeric?package=exDE&version=1.0.0" data-mini-rdoc="exDE::numeric">numeric</a> vector giving the proportion of time spent
in host seeking/bloodfeeding and resting/oviposition</dd>
<dt>r</dt>
<dd>probability of mosquito being repelled upon contact with ITN</dd>
<dt>s</dt>
<dd>probability of mosquito successfully feeding upon contact with ITN</dd>
<dt>phi</dt>
<dd>a <a href="/link/function?package=exDE&version=1.0.0" data-mini-rdoc="exDE::function">function</a> that takes a single argument <code>t</code> and returns the level of ITN coverage at that time</dd></dl>

Arguments

This model of ITN based vector control was originally described in <a href='https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-6-10'>https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-6-10</a>.

Make parameters for Le Menach ITN model of vector control — make_parameters_vc_lemenach

<dl>

<dt>pars</dt>
<dd>an <a href='https://rdrr.io/r/base/environment.html'>environment</a></dd>


<dt>tau0_frac</dt>
<dd>a <a href='https://rdrr.io/r/base/numeric.html'>numeric</a> vector giving the proportion of time spent
in host seeking/bloodfeeding and resting/oviposition</dd>


<dt>r</dt>
<dd>probability of mosquito being repelled upon contact with ITN</dd>


<dt>s</dt>
<dd>probability of mosquito successfully feeding upon contact with ITN</dd>


<dt>phi</dt>
<dd>a <a href='https://rdrr.io/r/base/function.html'>function</a> that takes a single argument <code>t</code> and returns the level of ITN coverage at that time</dd>

</dl>

make_parameters_vc_lemenach: Make parameters for Le Menach ITN model of vector control

Description

Usage

Value

Arguments