xDE_diffeqn_mosy

Mirrors xDE_diffeqn but only includes the adult and aquatic
mosquito components.

Provides tools to set up modular ordinary and delay differential equation
models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved
by S3 dispatch on parameter lists for each component which is used to compute
the full set of differential equations which may be solved using
any of the packages for numerical simulation of differential equations in R. The
methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Sean L. Wu

exDE

Extensible Differential Equations for Mosquito-Borne Pathogen
Modeling

David L. Smith

xDE_diffeqn_mosy function

<dl><dt>t</dt>
<dd>current simulation time</dd>
<dt>y</dt>
<dd>state vector</dd>
<dt>pars</dt>
<dd>an <a href="/link/environment?package=exDE&version=1.0.0" data-mini-rdoc="exDE::environment">environment</a></dd>
<dt>kappa</dt>
<dd>a vector</dd>
<dt>MosyBehavior</dt>
<dd>a <a href="/link/list?package=exDE&version=1.0.0" data-mini-rdoc="exDE::list">list</a> emulating the output of MosquitoBehavior for
the appropriate adult mosquito model</dd></dl>

Arguments

Generalized spatial differential equation model (mosquito only) — xDE_diffeqn_mosy

<dl>

<dt>t</dt>
<dd>current simulation time</dd>


<dt>y</dt>
<dd>state vector</dd>


<dt>pars</dt>
<dd>an <a href='https://rdrr.io/r/base/environment.html'>environment</a></dd>


<dt>kappa</dt>
<dd>a vector</dd>


<dt>MosyBehavior</dt>
<dd>a <a href='https://rdrr.io/r/base/list.html'>list</a> emulating the output of MosquitoBehavior for
the appropriate adult mosquito model</dd>

</dl>

xDE_diffeqn_mosy: Generalized spatial differential equation model (mosquito only)

Description

Usage

Value

Arguments