plot.ExomeCopy


    Logical, whether normalized read counts should be drawn.
  

points


    A vector of the same length as b, specifying a color for each of the
    states of the HMM.
  

cols


    Logical, whether a default legend should be shown.
  

show.legend

main

xlab

ylab

xlim

ylim


  Plots the predicted copy count segments of an ExomeCopy object


Detection of copy number variants (CNV) from exome
sequencing samples, including unpaired samples.  The package
implements a hidden Markov model which uses positional
covariates, such as background read depth and GC-content, to
simultaneously normalize and segment the samples into regions
of constant copy count.

Michael Love

exomeCopy

Copy number variant detection from exome sequencing read depth

plot.ExomeCopy function

Logical, whether normalized read counts should be drawn.

A vector of the same length as b, specifying a color for each of the
    states of the HMM.

Logical, whether a default legend should be shown.

Plots the predicted copy count segments of an ExomeCopy object

plot.ExomeCopy: Plot function for exomeCopy

Description

Usage

Arguments

See Also

Examples