explor (version 0.3.4)

PCA_var_plot: Interactive PCA variables plot

Description

This function generates an HTML widget displaying the variables plot of a PCA result.

Usage

PCA_var_plot(res, xax = 1, yax = 2, var_sup = TRUE,
  var_lab_min_contrib = 0, scale_unit = FALSE, col_var = NULL,
  size_var = NULL, zoom_callback = NULL, in_explor = FALSE,
  xlim = NULL, ylim = NULL, ...)

Arguments

res

Result of prepare_results() call

xax

Horizontal axis number

yax

Vertical axis number

var_sup

TRUE to display supplementary variables

var_lab_min_contrib

Contribution threshold to display points labels

scale_unit

wether the PCA is scaled

col_var

name of the variable for points color

size_var

name of the variable for points size

zoom_callback

scatterD3 zoom callback JavaScript body

in_explor

wether the plot is to be displayed in the explor interface

xlim

custom x axis limits

ylim

custom y axis limits

...

Other arguments passed to scatterD3