explorase (version 1.36.0)

exp_loadData: Load experimental data

Description

Load experimental data of a specified type into exploRase (and GGobi).

Usage

exp_loadData(exp_data, data_name = "expression", ent_type =
"gene", sync = FALSE, add_to_design = !nrow(exp_designFrame(ent_type)))

Arguments

exp_data

a data frame containing experimental data, with observations as rows and conditions as columns.

data_name

name of the dataset in GGobi

ent_type

the entity type ("gene", "met", ...) of the data

sync

whether to synchronize the other data models with the experimental data. If sync is TRUE, the entity information and experimental design tables will be limited to the observations and conditions, respectively, in the experimental data. This is experimental.

add_to_design

whether to add the columns in the dataset as conditions in the experimental design, if they are not there already

Details

Organizes experimental data, loads it into GGobi and synchronizes it with other data (design and entity info)