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exreport

Fast, Reliable and Elegant Reproducible Research

exreport has been conceived to obtain robust and transparent reproducibility when developing scientific publishable results. Describe your experiments and your analysis in an exreport script and reproduce publish-ready descriptive statistics, tables, plots and many more with a single click.

Check our dedicated wwebsite and documentation:

Install from github via devtools

# install.packages("devtools")
devtools::install_github("jacintoarias/exreport")

Features

  • Define a data model to organice and process your experiments.
  • Evaluate your experimental data by using powerful statistical tests.
  • Visualice your data by generating beautiful plots and tables.
  • Comunicate generate interactive HTML reports and use it to export the elements toyour paper or to discuss the results with your coleages.
  • Repeat instantly and have robust reproducibility of your results by using your exreport script.

See it in action in our website experiments.

Collaborate

Collaborate with us in github by identifying bugs, requesting new features or programming yourself!

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Version

Install

install.packages('exreport')

Monthly Downloads

199

Version

0.4.1

License

GPL-2

Maintainer

Jacinto Arias

Last Published

February 1st, 2016

Functions in exreport (0.4.1)

expCreate

Load data and create an exreport experiment
expCreateFromTable

Create an exreport experiment from a tabular representation
expInstantiate

Instatiate the methods in the experiment for each one of the different parameter configurations.
expCombine

Combine two experiments with different outputs
expReorder

Change the order of elements that an experiment contains
expExtract

Extract statistically equivalent methods from a multiple comparison test
testMultiplePairwise

Multiple Comparison Statistical Test (Friedman + Pairwise Shaffer PostHoc)
testMultipleControl

Multiple Comparison Statistical Test (Friedman + Control Holm PostHoc)
tabularTestPairwise

Display pairwise information about a multiple test between the methods
plotCumulativeRank

Area plot for the rank distribution from a multiple test
expRename

Change the name of elements that an experiment contains
expSubset

Obtains a subset of an experiment matching the given conditions
plotExpSummary

Barplot for summarizing an experiment output variable
tabularExpSummary

Summarize the experiment with a table for given outputs
expConcat

Concatenate rows of matching experiments
expReduce

Reduce a parameter by a function for each method, problem and remaining parameter configuration interaction
plotRankDistribution

Boxplot for the ranks distribution and control hypotheses from multiple test
expRemoveDuplicated

Remove duplicated rows from an experiment
exreportAdd

Add elements to an existing exreport document
exreportRender

Render an exreport document
wekaExperiment

Problem: Comparison between several Machine Learning algorithms from the Weka library
tabularTestSummary

Summarize the result of a multiple comparison statistical test in a table
expExtend

Extend an experiment by adding new parameters
exreport

Create a new exreport document
expGetDuplicated

Create a new experiment with only the duplicated rows
testPaired

Paired Wilcoxon statistical test