create_temp_eyeris_database

Creates a unique temporary database for use in parallel jobs to avoid
concurrency issues. The temporary database is named using process ID
and timestamp to ensure uniqueness.

internal

Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the Stanford Wu Tsai Human Performance Alliance, Stanford Ric Weiland Graduate Fellowship, Stanford Center for Mind, Brain, Computation and Technology, NIH National Institute on Aging Grants (R01-AG065255, R01-AG079345), NSF GRFP (DGE-2146755), McKnight Brain Research Foundation Clinical Translational Research Scholarship in Cognitive Aging and Age-Related Memory Loss, American Brain Foundation, and the American Academy of Neurology.

Shawn Schwartz

eyeris

Flexible, Extensible, & Reproducible Pupillometry Preprocessing

create_temp_eyeris_database function

<dl><dt>bids_dir</dt>
<dd>Path to the BIDS directory containing derivatives</dd>
<dt>base_db_path</dt>
<dd>Base database name (e.g., "my-project")</dd>
<dt>verbose</dt>
<dd>Whether to print verbose output</dd></dl>

Arguments

Create temporary database for parallel processing — create_temp_eyeris_database

<dl>

<dt>bids_dir</dt>
<dd>Path to the BIDS directory containing derivatives</dd>


<dt>base_db_path</dt>
<dd>Base database name (e.g., "my-project")</dd>


<dt>verbose</dt>
<dd>Whether to print verbose output</dd>

</dl>

create_temp_eyeris_database: Create temporary database for parallel processing

Description

Usage

Value

Arguments