eyeris_db_read

Reads <code>eyeris</code> data from the project database with dplyr-style interface.

Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the Stanford Wu Tsai Human Performance Alliance, Stanford Ric Weiland Graduate Fellowship, Stanford Center for Mind, Brain, Computation and Technology, NIH National Institute on Aging Grants (R01-AG065255, R01-AG079345), NSF GRFP (DGE-2146755), McKnight Brain Research Foundation Clinical Translational Research Scholarship in Cognitive Aging and Age-Related Memory Loss, American Brain Foundation, and the American Academy of Neurology.

Shawn Schwartz

eyeris

Flexible, Extensible, & Reproducible Pupillometry Preprocessing

eyeris_db_read function

<dl><dt>con</dt>
<dd>Database connection</dd>
<dt>data_type</dt>
<dd>Type of data to read ("timeseries", "epochs", "epoch_timeseries", "epoch_summary", "events", "blinks")</dd>
<dt>subject</dt>
<dd>Optional subject ID filter</dd>
<dt>session</dt>
<dd>Optional session ID filter</dd>
<dt>task</dt>
<dd>Optional task name filter</dd>
<dt>run</dt>
<dd>Optional run number filter</dd>
<dt>eye_suffix</dt>
<dd>Optional eye suffix filter</dd>
<dt>epoch_label</dt>
<dd>Optional epoch label filter (for epoched data)</dd>
<dt>table_name</dt>
<dd>Exact table name (overrides other parameters)</dd></dl>

Arguments

Read eyeris data from database — eyeris_db_read

<dl>

<dt>con</dt>
<dd>Database connection</dd>


<dt>data_type</dt>
<dd>Type of data to read ("timeseries", "epochs", "epoch_timeseries", "epoch_summary", "events", "blinks")</dd>


<dt>subject</dt>
<dd>Optional subject ID filter</dd>


<dt>session</dt>
<dd>Optional session ID filter</dd>


<dt>task</dt>
<dd>Optional task name filter</dd>


<dt>run</dt>
<dd>Optional run number filter</dd>


<dt>eye_suffix</dt>
<dd>Optional eye suffix filter</dd>


<dt>epoch_label</dt>
<dd>Optional epoch label filter (for epoched data)</dd>


<dt>table_name</dt>
<dd>Exact table name (overrides other parameters)</dd>

</dl>

eyeris_db_read: Read eyeris data from database

Description

Usage

Value

Arguments