merge_temp_database

Safely merges data from a temporary database into the main project database
using file locking to prevent concurrent access issues. This function handles
the transactional copying of all tables from the temporary database.

internal

Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the Stanford Wu Tsai Human Performance Alliance, Stanford Ric Weiland Graduate Fellowship, Stanford Center for Mind, Brain, Computation and Technology, NIH National Institute on Aging Grants (R01-AG065255, R01-AG079345), NSF GRFP (DGE-2146755), McKnight Brain Research Foundation Clinical Translational Research Scholarship in Cognitive Aging and Age-Related Memory Loss, American Brain Foundation, and the American Academy of Neurology.

Shawn Schwartz

eyeris

Flexible, Extensible, & Reproducible Pupillometry Preprocessing

merge_temp_database function

<dl><dt>temp_db_info</dt>
<dd>List containing temp database connection and paths</dd>
<dt>verbose</dt>
<dd>Whether to print verbose output</dd>
<dt>max_retries</dt>
<dd>Maximum number of retry attempts for file locking</dd>
<dt>retry_delay</dt>
<dd>Delay between retry attempts in seconds</dd></dl>

Arguments

Merge temporary database into main database — merge_temp_database

<dl>

<dt>temp_db_info</dt>
<dd>List containing temp database connection and paths</dd>


<dt>verbose</dt>
<dd>Whether to print verbose output</dd>


<dt>max_retries</dt>
<dd>Maximum number of retry attempts for file locking</dd>


<dt>retry_delay</dt>
<dd>Delay between retry attempts in seconds</dd>

</dl>

merge_temp_database: Merge temporary database into main database

Description

Usage

Value

Arguments