zip_and_cleanup_source_figures

Creates zip files for all PNG and JPG files in each run directory under
source/figures/, then deletes the individual image files. This reduces
file count while preserving all figure data in compressed format.

internal

Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the Stanford Wu Tsai Human Performance Alliance, Stanford Ric Weiland Graduate Fellowship, Stanford Center for Mind, Brain, Computation and Technology, NIH National Institute on Aging Grants (R01-AG065255, R01-AG079345), NSF GRFP (DGE-2146755), McKnight Brain Research Foundation Clinical Translational Research Scholarship in Cognitive Aging and Age-Related Memory Loss, American Brain Foundation, and the American Academy of Neurology.

Shawn Schwartz

eyeris

Flexible, Extensible, & Reproducible Pupillometry Preprocessing

zip_and_cleanup_source_figures function

<dl><dt>report_path</dt>
<dd>Path to the report directory containing source/figures/</dd>
<dt>eye_suffix</dt>
<dd>Optional eye suffix for binocular data</dd>
<dt>verbose</dt>
<dd>Whether to print verbose output</dd></dl>

Arguments

Zip and cleanup source figure files — zip_and_cleanup_source_figures

<dl>

<dt>report_path</dt>
<dd>Path to the report directory containing source/figures/</dd>


<dt>eye_suffix</dt>
<dd>Optional eye suffix for binocular data</dd>


<dt>verbose</dt>
<dd>Whether to print verbose output</dd>

</dl>

zip_and_cleanup_source_figures: Zip and cleanup source figure files

Description

Usage

Value

Arguments