coordlist_to_vol

Converts a sparse coordinate list to its non-sparse volumetric representation.

Supports fMRI (functional magnetic resonance imaging)
analysis tasks including reading in 'CIFTI', 'GIFTI' and
'NIFTI' data, temporal filtering, nuisance regression, and
aCompCor (anatomical Components Correction) (Muschelli et al.
(2014) <doi:10.1016/j.neuroimage.2014.03.028>).

Amanda Mejia

fMRItools

Routines for Common fMRI Processing Tasks

Damon Pham

Mark Fiecas

coordlist_to_vol function

<dl><dt>coords</dt>
<dd>The sparse coordinate list. Should be a <code>"data.frame"</code> or
matrix with voxels along the rows and three or four columns. The first three
columns should be integers indicating the spatial coordinates of the voxel.
If the fourth column is present, it will be the value used for that voxel.
If it is absent, the value will be <code>TRUE</code> or <code>1</code> if <code>fill</code>
is not one of those values, and <code>FALSE</code> or <code>0</code> if <code>fill</code> is.
The data type will be the same as that of <code>fill</code>. The fourth column
must be logical or numeric.</dd>
<dt>fill</dt>
<dd>Logical or numeric fill value for the volume. Default:
<code>FALSE</code>.</dd></dl>

Arguments

Convert coordinate list to 3D array — coordlist_to_vol

<dl>

<dt>coords</dt>
<dd>The sparse coordinate list. Should be a <code>"data.frame"</code> or
matrix with voxels along the rows and three or four columns. The first three
columns should be integers indicating the spatial coordinates of the voxel.
If the fourth column is present, it will be the value used for that voxel.
If it is absent, the value will be <code>TRUE</code> or <code>1</code> if <code>fill</code>
is not one of those values, and <code>FALSE</code> or <code>0</code> if <code>fill</code> is.
The data type will be the same as that of <code>fill</code>. The fourth column
must be logical or numeric.</dd>


<dt>fill</dt>
<dd>Logical or numeric fill value for the volume. Default:
<code>FALSE</code>.</dd>

</dl>

coordlist_to_vol: Convert coordinate list to 3D array

Description

Usage

Value

Arguments