facilitation (version 0.5.2)

stackplot: Plots

Description

Plotting functions.

Usage

stackplot(mat, col, legend, log.y = FALSE, perc = F, qt = 100, ...)

Arguments

mat

A population matrix, as produced by abundance.matrix or something that can be coerced to matrix

col

Optional. A color vector

legend

Optional. An array of names

log.y

Logical. Should the y-axis be plotted in a logarithmic scale?

perc

Logical. If set to true, will output the y-axis as a percentage instead of the absolute numbers

qt

Optional. For distributions, show only up to quantile qt (percentage)

…

Further parameters to be passed to the lower level plot function

Details

The stackplot function produces a stacked plot of the population over time. Notice that the population should have at least two stages for this function to work.

Examples

# NOT RUN {
data(twospecies)
ab <- abundance.matrix(twospecies,seq(0,twospecies$maxtime,by=1))
# species 1
stackplot(ab[,1:3])
# species 2
stackplot(ab[,4:5])
# }