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fasjem (version 1.1.2)

A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

Description

This is an R implementation of "A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models" (FASJEM). The FASJEM algorithm can be used to estimate multiple related precision matrices. For instance, it can identify context-specific gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogonous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(fasjem) to learn the basic functions provided by this package. For more details, please see .

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Install

install.packages('fasjem')

Monthly Downloads

27

Version

1.1.2

License

GPL-2

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Maintainer

Beilun Wang

Last Published

August 1st, 2017

Functions in fasjem (1.1.2)

net.neighbors

Get neighbors of a node in each graph in the input list of multiple graphs
plot.fasjem

Plotting functions for displaying the list of multiple graphs generated by the fasjem algorithm
net.edges

List the edges of each graph in the input list of multiple graphs
net.hubs

Get degrees of the most connected nodes of each graph in the input list of multiple graphs.
fasjem

A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models
net.degree

List the degree of every node of each graph in the input list of multiple graphs.
exampleData

A simulated toy dataset that includes 2 data matrices (about 2 related tasks).
fasjem-package

A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models