analysis-nutritional

<p>Specialized functions for nutritional analysis of FB4 simulation results.
Includes N:P ratio analysis (<code>calculate_np_ratios</code>,
<code>compare_with_redfield</code>), nutrient retention efficiency calculations
(<code>calculate_nutrient_efficiencies</code>), stoichiometric balance assessment
(<code>calculate_stoichiometric_balance</code>), body composition analysis
(<code>analyze_composition_by_size</code>, <code>analyze_composition_changes</code>),
diet quality assessment (<code>assess_diet_quality</code>), and an integrated
wrapper (<code>comprehensive_nutritional_analysis</code>).</p>

An implementation of the 'Fish Bioenergetics 4.0' framework
described in Deslauriers et al. (2017)
<doi:10.1080/03632415.2017.1377558>. Provides automated parameter
optimization, multi-prey diet modeling, and comprehensive energy budget
simulations for fisheries research and aquaculture applications. An
optional 'TMB' (Template Model Builder) backend delivers 10-50x speedup
in maximum likelihood estimation while maintaining full backward
compatibility. Includes species-specific parameter databases and tools
for modeling fish growth, consumption, and metabolism under varying
environmental conditions.

Hans Ttito

analysis-nutritional: Nutritional Analysis Functions for FB4 Results

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