build_tmb_uncertainty

Extracts all <code>_est</code> / <code>_se</code> pairs reported by the TMB backend
into a single named list. Called by <code>create_method_specific_data</code>
when <code>method == "mle"</code> and <code>backend == "tmb"</code>.

internal

An implementation of the 'Fish Bioenergetics 4.0' framework
described in Deslauriers et al. (2017)
<doi:10.1080/03632415.2017.1377558>. Provides automated parameter
optimization, multi-prey diet modeling, and comprehensive energy budget
simulations for fisheries research and aquaculture applications. An
optional 'TMB' (Template Model Builder) backend delivers 10-50x speedup
in maximum likelihood estimation while maintaining full backward
compatibility. Includes species-specific parameter databases and tools
for modeling fish growth, consumption, and metabolism under varying
environmental conditions.

Hans Ttito

fb4package

'Fish Bioenergetics 4.0' Model Implementation with
High-Performance 'TMB' Backend

build_tmb_uncertainty function

<dl><dt>raw_results</dt>
<dd>Raw output list from the MLE/TMB strategy</dd></dl>

Arguments

Build TMB uncertainty list for MLE results — build_tmb_uncertainty

<dl>

<dt>raw_results</dt>
<dd>Raw output list from the MLE/TMB strategy</dd>

</dl>

build_tmb_uncertainty: Build TMB uncertainty list for MLE results

Description

Usage

Value

Arguments