Functions for preparing, validating, and transforming the temporal and
parameter data required by the FB4 simulation engine. The main entry
point is prepare_simulation_data, which orchestrates
species-parameter processing (via process_species_parameters)
and temporal-data processing (via process_bioenergetic_data).
Ancillary functions handle time-series interpolation
(interpolate_time_series), diet normalisation, reproduction
scheduling, and TMB-format transformations for statistical fitting
strategies.
No return value; this page documents the data processing functions module. See individual function documentation for return values.
Hanson, P.C., Johnson, T.B., Schindler, D.E. and Kitchell, J.F. (1997). Fish Bioenergetics 3.0. University of Wisconsin Sea Grant Institute, Madison, WI.
Deslauriers, D., Chipps, S.R., Breck, J.E., Rice, J.A. and Madenjian, C.P. (2017). Fish Bioenergetics 4.0: An R-based modeling application. Fisheries, 42(11), 586–596. tools:::Rd_expr_doi("10.1080/03632415.2017.1377558")