execute_simulation_with_method

Unified simulation execution function used by all strategies.
Wraps <code>run_fb4_simulation</code> with a common interface for
p_value, ration_percent, and ration_grams methods.

internal

An implementation of the 'Fish Bioenergetics 4.0' framework
described in Deslauriers et al. (2017)
<doi:10.1080/03632415.2017.1377558>. Provides automated parameter
optimization, multi-prey diet modeling, and comprehensive energy budget
simulations for fisheries research and aquaculture applications. An
optional 'TMB' (Template Model Builder) backend delivers 10-50x speedup
in maximum likelihood estimation while maintaining full backward
compatibility. Includes species-specific parameter databases and tools
for modeling fish growth, consumption, and metabolism under varying
environmental conditions.

Hans Ttito

fb4package

'Fish Bioenergetics 4.0' Model Implementation with
High-Performance 'TMB' Backend

execute_simulation_with_method function

<dl><dt>method_type</dt>
<dd>Method type ("p_value", "ration_percent", "ration_grams")</dd>
<dt>method_value</dt>
<dd>Method-specific value</dd>
<dt>processed_simulation_data</dt>
<dd>Complete processed simulation data</dd>
<dt>oxycal</dt>
<dd>Oxycalorific coefficient, default 13560</dd>
<dt>extract_metric</dt>
<dd>What to extract: "weight", "consumption", "full" (default "full")</dd>
<dt>output_daily</dt>
<dd>Whether to include daily output, default FALSE for fitting</dd>
<dt>verbose</dt>
<dd>Whether to show progress messages, default FALSE</dd></dl>

Arguments

Execute simulation with any method — execute_simulation_with_method

<dl>

<dt>method_type</dt>
<dd>Method type ("p_value", "ration_percent", "ration_grams")</dd>


<dt>method_value</dt>
<dd>Method-specific value</dd>


<dt>processed_simulation_data</dt>
<dd>Complete processed simulation data</dd>


<dt>oxycal</dt>
<dd>Oxycalorific coefficient, default 13560</dd>


<dt>extract_metric</dt>
<dd>What to extract: "weight", "consumption", "full" (default "full")</dd>


<dt>output_daily</dt>
<dd>Whether to include daily output, default FALSE for fitting</dd>


<dt>verbose</dt>
<dd>Whether to show progress messages, default FALSE</dd>

</dl>

execute_simulation_with_method: Execute simulation with any method

Description

Usage

Value

Arguments