extract_basic_parameters

Extract parameters for basic model

internal

An implementation of the 'Fish Bioenergetics 4.0' framework
described in Deslauriers et al. (2017)
<doi:10.1080/03632415.2017.1377558>. Provides automated parameter
optimization, multi-prey diet modeling, and comprehensive energy budget
simulations for fisheries research and aquaculture applications. An
optional 'TMB' (Template Model Builder) backend delivers 10-50x speedup
in maximum likelihood estimation while maintaining full backward
compatibility. Includes species-specific parameter databases and tools
for modeling fish growth, consumption, and metabolism under varying
environmental conditions.

Hans Ttito

fb4package

'Fish Bioenergetics 4.0' Model Implementation with
High-Performance 'TMB' Backend

extract_basic_parameters function

<dl><dt>results</dt>
<dd>Current results list</dd>
<dt>params</dt>
<dd>Optimized parameters (log scale)</dd>
<dt>obj</dt>
<dd>TMB objective function</dd>
<dt>confidence_level</dt>
<dd>Confidence level</dd>
<dt>verbose</dt>
<dd>Show progress</dd></dl>

Arguments

Extract parameters for basic model — extract_basic_parameters

<dl>

<dt>results</dt>
<dd>Current results list</dd>


<dt>params</dt>
<dd>Optimized parameters (log scale)</dd>


<dt>obj</dt>
<dd>TMB objective function</dd>


<dt>confidence_level</dt>
<dd>Confidence level</dd>


<dt>verbose</dt>
<dd>Show progress</dd>

</dl>

extract_basic_parameters: Extract parameters for basic model

Description

Usage

Value

Arguments