extract_tmb_results

Extract and process optimization results for both basic and hierarchical models.
Handles standard errors, confidence intervals, and model diagnostics.

internal

An implementation of the 'Fish Bioenergetics 4.0' framework
described in Deslauriers et al. (2017)
<doi:10.1080/03632415.2017.1377558>. Provides automated parameter
optimization, multi-prey diet modeling, and comprehensive energy budget
simulations for fisheries research and aquaculture applications. An
optional 'TMB' (Template Model Builder) backend delivers 10-50x speedup
in maximum likelihood estimation while maintaining full backward
compatibility. Includes species-specific parameter databases and tools
for modeling fish growth, consumption, and metabolism under varying
environmental conditions.

Hans Ttito

fb4package

'Fish Bioenergetics 4.0' Model Implementation with
High-Performance 'TMB' Backend

extract_tmb_results function

<dl><dt>obj</dt>
<dd>TMB objective function</dd>
<dt>opt_result</dt>
<dd>Optimization result</dd>
<dt>model_type</dt>
<dd>Type of model ("basic" or "hierarchical")</dd>
<dt>confidence_level</dt>
<dd>Confidence level for intervals</dd>
<dt>verbose</dt>
<dd>Show extraction progress</dd></dl>

Arguments

Extract comprehensive results from TMB optimization — extract_tmb_results

<dl>

<dt>obj</dt>
<dd>TMB objective function</dd>


<dt>opt_result</dt>
<dd>Optimization result</dd>


<dt>model_type</dt>
<dd>Type of model ("basic" or "hierarchical")</dd>


<dt>confidence_level</dt>
<dd>Confidence level for intervals</dd>


<dt>verbose</dt>
<dd>Show extraction progress</dd>

</dl>

extract_tmb_results: Extract comprehensive results from TMB optimization

Description

Usage

Value

Arguments