match_ind_maf

<p>minor allele frequencies of (all) SNPs</p>

indep_index

<p>Matches MAF distribution of independent set of SNPs to MAF distribution of whole set of SNPs to avoid MAF-based confounding.</p>

Provides functions to implement the Flexible cFDR (Hutchinson et al. (2021) <doi:10.1371/journal.pgen.1009853>) and Binary cFDR (Hutchinson et al. (2021) <doi:10.1101/2021.10.21.465274>) methodologies to leverage auxiliary data from arbitrary distributions, for example functional genomic data, with GWAS p-values to generate re-weighted p-values.

Anna Hutchinson

fcfdr

match_ind_maf: Function to downsample independent SNPs to match MAF distribution of whole set.

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