autoplot.caps

This function creates a visualization of the result of the k-mean alignment
algorithm and invisibly returns the corresponding <a href="https://ggplot2.tidyverse.org/reference/ggplot.html">ggplot2::ggplot</a> object
which enable further customization of the plot. The user can choose to
visualize either the amplitude information data in which case original and
aligned curves are shown or the phase information data in which case the
estimated warping functions are shown.

Implementations of the k-means, hierarchical agglomerative and
DBSCAN clustering methods for functional data which allows for jointly
aligning and clustering curves. It supports functional data defined on
one-dimensional domains but possibly evaluating in multivariate codomains.
It supports functional data defined in arrays but also via the 'fd' and
'funData' classes for functional data defined in the 'fda' and 'funData'
packages respectively. It currently supports shift, dilation and affine
warping functions for functional data defined on the real line and uses the
SRSF framework to handle boundary-preserving warping for functional data
defined on a specific interval. Main reference for the k-means algorithm:
Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment
for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for
the SRSF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013)
"Generative models for functional data using phase and amplitude separation"
<doi:10.1016/j.csda.2012.12.001>.

Aymeric Stamm

fdacluster

Joint Clustering and Alignment of Functional Data

Laura Sangalli

Piercesare Secchi

Simone Vantini

Valeria Vitelli

Alessandro Zito

autoplot.caps function

<dl><dt>object</dt>
<dd>An object of class <code>caps</code>.</dd>
<dt>type</dt>
<dd>A string specifying the type of information to display. Choices
are <code>"amplitude"</code> for plotting the original and aligned curves which
represent amplitude information data or <code>"phase"</code> for plotting the
corresponding warping functions which represent phase information data.
Defaults to <code>"amplitude"</code>.</dd>
<dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

This function creates a visualization of the result of the k-mean alignment
algorithm and invisibly returns the corresponding <a href='https://ggplot2.tidyverse.org/reference/ggplot.html'>ggplot2::ggplot</a> object
which enable further customization of the plot. The user can choose to
visualize either the amplitude information data in which case original and
aligned curves are shown or the phase information data in which case the
estimated warping functions are shown.

Visualizes the result of a clustering strategy stored in a caps object with
ggplot2 — autoplot.caps

<dl>

<dt>object</dt>
<dd>An object of class <code>caps</code>.</dd>


<dt>type</dt>
<dd>A string specifying the type of information to display. Choices
are <code>"amplitude"</code> for plotting the original and aligned curves which
represent amplitude information data or <code>"phase"</code> for plotting the
corresponding warping functions which represent phase information data.
Defaults to <code>"amplitude"</code>.</dd>


<dt>...</dt>
<dd>Not used.</dd>

</dl>

autoplot.caps: Visualizes the result of a clustering strategy stored in a `caps` object with ggplot2

Description

Usage

Value

Arguments

Examples