fdasrvf (version 1.9.4)

pair_align_functions_bayes: Align two functions

Description

This function aligns two functions using Bayesian SRSF framework. It will align f2 to f1

Usage

pair_align_functions_bayes(
  f1,
  f2,
  timet,
  iter = 15000,
  times = 5,
  tau = ceiling(times * 0.4),
  powera = 1,
  showplot = TRUE,
  extrainfo = FALSE
)

Arguments

f1

function 1

f2

function 2

timet

sample points of functions

iter

number of iterations (default = 15000)

times

factor of length of subsample points to look at (default = 5)

tau

standard deviation of Normal prior for increment (default ceil(times*.4))

powera

Dirchelet prior parameter (default 1)

showplot

shows plots of functions (default = T)

extrainfo

T/F whether additional information is returned

Value

Returns a list containing

f1

function 1

f2_q

registered function using quotient space

gam_q

warping function quotient space

f2_a

registered function using ambient space

q2_a

warping function ambient space

match_collect

posterior samples from warping function (returned if extrainfo=TRUE)

dist_collect

posterior samples from the distances (returned if extrainfo=TRUE)

kappa_collect

posterior samples from kappa (returned if extrainfo=TRUE)

log_collect

log-likelihood of each sample (returned if extrainfo=TRUE)

pct_accept

vector of acceptance ratios for the warping function (returned if extrainfo=TRUE)

References

Cheng, W., Dryden, I. L., and Huang, X. (2016). Bayesian registration of functions and curves. Bayesian Analysis, 11(2), 447-475.

Examples

# NOT RUN {
data("simu_data")
out = pair_align_functions_bayes(simu_data$f[,1], simu_data$f[,2], simu_data$time)
# }