exp.arr

The source of this Data is a lipid metablolism study described and  analyzed in Dudoit,S., Yang,Y.H, Callow,M.J. and Speed,T.P. (2002) Statistical Methods for Identifying Differentially Expressed Genes in Replicated cDNA Microarray Experiments. Stat Sinica, 12, 111-139.


datasets

This package contains two main functions. The first is
fdr.ma which takes normalized expression data array,
experimental design and computes adjusted p-values It returns
the fdr adjusted p-values and plots, according to the methods
described in (Reiner, Yekutieli and Benjamini 2002). The
second, is fdr.gui() which creates a simple graphic user
interface to access fdr.ma

Effi Kenigsberg

fdrame

FDR adjustments of Microarray Experiments (FDR-AME)

exp.arr function

The format is:
 num [1:6384, 1:16] -0.2500  0.0329 -0.2065 -0.2240 -0.8542 ...
 - attr(*, "dimnames")=List of 2
  Each row represents a gene: chr [1:6384] "1" "2" "3" "4" ...
  Each column represents a sample : chr [1:16] "X1" "X2" "X3" "X4" ...

Format

http://www.stat.berkeley.edu/users/terry/zarray/Html/matt.html

Source

The source of this Data is a lipid metablolism study described and  analyzed in Dudoit,S., Yang,Y.H, Callow,M.J. and Speed,T.P. (2002) Statistical Methods for Identifying Differentially Expressed Genes in Replicated cDNA Microarray Experiments. Stat Sinica, 12, 111-139.

exp.arr: Normalized Expression Array

Description

Usage

Arguments

Format

Source

Details

References

Examples