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ffpe (version 1.16.0)

Quality assessment and control for FFPE microarray expression data

Description

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

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Version

Version

1.16.0

License

GPL (>2)

Maintainer

Levi Waldron

Last Published

February 15th, 2017

Functions in ffpe (1.16.0)

ffpe-package

Quality assessment and control for FFPE microarray expression data
CATplot

Make a Concordance at the Top plot.
sortedIqrPlot

Minimal box plot of samples, which get ordered optionally by batch, then by IQR.
sampleQC

Sample quality control for FFPE expression data