osp_internal

Internal function to calculate the OSP metric from an SRF file.
This function calls the 'Python' implementation of the OSP calculation.

internal

The Occluded Surface (OS) algorithm is a widely used approach for analyzing atomic packing in biomolecules as described by Pattabiraman N, Ward KB, Fleming PJ (1995) <doi:10.1002/jmr.300080603>. Here, we introduce 'fibos', an 'R' and 'Python' package that extends the 'OS' methodology, as presented in Soares HHM, Romanelli JPR, Fleming PJ, da Silveira CH (2024) <doi:10.1101/2024.11.01.621530>.

Herson Soares

fibos

Occlusion Surface Using the Occluded Surface and Fibonacci
Occluded Surface

Carlos Silveira

João Romanelli

Patrick Fleming

Posit Software, PBC 

osp_internal function

<dl><dt>file</dt>
<dd>Path to the SRF file generated by the 'occluded_surface' function.</dd></dl>

Arguments

Carlos Henrique da Silveira (carlos.silveira@unifei.edu.br)
Herson Hebert Mendes Soares (hersonhebert@hotmail.com)
Joao Paulo Roquim Romanelli (joaoromanelli@unifei.edu.br)
Patrick Fleming (Pat.Fleming@jhu.edu)

Author

Calculate OSP Metric — osp_internal

<dl>

<dt>file</dt>
<dd>Path to the SRF file generated by the 'occluded_surface' function.</dd>

</dl>

osp_internal: Calculate OSP Metric

Description

Usage

Value

Arguments

Author