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fields (version 12.3)

Tools for Spatial Data

Description

For curve, surface and function fitting with an emphasis on splines, spatial data, geostatistics, and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and compactly supported covariance functions for large data sets. The splines and Kriging methods are supported by functions that can determine the smoothing parameter (nugget and sill variance) and other covariance function parameters by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to use function that also estimates the correlation scale (range parameter). A major feature is that any covariance function implemented in R and following a simple format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details as a companion to the manual pages. The commented source code can be viewed by expanding the source code version and looking in the R subdirectory. The reference for fields can be generated by the citation function in R and has DOI . Development of this package was supported in part by the National Science Foundation Grant 1417857, the National Center for Atmospheric Research, and Colorado School of Mines. See the Fields URL for a vignette on using this package and some background on spatial statistics.

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Install

install.packages('fields')

Monthly Downloads

46,589

Version

12.3

License

GPL (>= 2)

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Maintainer

Douglas Nychka

Last Published

May 17th, 2021

Functions in fields (12.3)

CO2

Simulated global CO2 observations
Krig.null.function

Default function to create fixed matrix part of spatial process model.
Exponential, Matern, Radial Basis

Covariance functions
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
CovarianceUpper

Evaluate covariance over upper triangle of distance matrix
fields exported FORTRAN

FORTRAN subroutines used in fields functions
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
Krig

Kriging surface estimate
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
RCMexample

3-hour precipitation fields from a regional climate model
Krig.replicates

Collapse repeated spatial locations into unique locations
arrow.plot

Adds arrows to a plot
as.image

Creates image from irregular x,y,z
bplot.xy

Boxplots for conditional distribution
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
KrigFindLambda

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
QTps

Robust and Quantile smoothing using a thin-plate spline
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
poly.image

Image plot for cells that are irregular quadrilaterals.
Tps

Thin plate spline regression
US.dat

Outline of coterminous US and states.
add.image

Adds an image to an existing plot.
US

Plot of the US with state boundaries
flame

Response surface experiment ionizing a reagent
fields testing scripts

Testing fields functions
predictSE

Standard errors of predictions for Krig spatial process estimate
lennon

Gray image of John Lennon.
predict.Krig

Evaluation of Krig spatial process estimate.
fields-stuff

Fields supporting functions
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
predictSurface

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.
circulantEmbedding

Efficiently Simulates a Stationary 1 and 2D Gaussian random fields
sim.spatialProcess

Conditional simulation of a spatial process
spatialProcess

Estimates a spatial process model.
fields

fields - tools for spatial data
compactToMat

Convert Matrix from Compact Vector to Standard Form
vgram.matrix

Computes a variogram from an image
splint

Cubic spline interpolation
world

Plot of the world
summary.ncdf

Summarizes a netCDF file handle
colorbar.plot

Adds color scale strips to an existing plot.
rat.diet

Experiment studying an appetite supressant in rats.
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
fields internal

Fields internal and secondary functions
rdist

Euclidean distance matrix or vector
surface.Krig

Plots a surface and contours
supportsArg

Tests if function supports a given argument
Wendland

Wendland family of covariance functions and supporting numerical functions
tim.colors

Some useful color tables for images and tools to handle them.
as.surface

Creates an "surface" object from grid values.
fields.grid

Using MKrig for predicting on a grid.
bplot

boxplot
xline

Draw a vertical line
image.plot

Draws an image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
print.Krig

Print kriging fit results.
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
image.smooth

Kernel smoother for irregular 2-d data
pushpin

Adds a "push pin" to an existing 3-d plot
set.panel

Specify a panel of plots
smooth.2d

Kernel smoother for irregular 2-d data
yline

Draw horizontal lines
spam2lz

Conversion of formats for sparse matrices
interp.surface

Fast bilinear interpolator from a grid.
image2lz

Some simple functions for subsetting images
fields.hints

fields - graphics hints
Chicago ozone test data

Data set of ozone measurements at 20 Chicago monitoring stations.
drape.plot

Perspective plot draped with colors in the facets.
envelopePlot

Add a shaded the region between two functions to an existing plot
minitri

Mini triathlon results
plot.Krig

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
mKrigMLE

Maximizes likelihood for the process marginal variance (sigma) and nugget standard deviation (tau) parameters (e.g. lambda) over a many covariance models or covariance parameter values.
plot.surface

Plots a surface
rdist.earth

Great circle distance matrix or vector
ozone2

Daily 8-hour ozone averages for sites in the Midwest
stats

Calculate summary statistics
registeringCode

Information objects that register C and FORTRAN functions.
sreg

Cubic smoothing spline regression
qsreg

Quantile or Robust spline regression
quilt.plot

Useful plots for visualizing irregular spatial data.
stats.bin

Bins data and finds some summary statistics.
summary.Krig

Summary for Krig or spatialProcess estimated models.
transformx

Linear transformation
vgram

Traditional or robust variogram methods for spatial data