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fields (version 6.6.1)

Tools for spatial data

Description

Fields is for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, robust, and thin plate splines, and Kriging for large data sets. The splines and Kriging methods are supporting by functions that can determine the smoothing parameter (nugget and sill variance) by cross validation and also by restricted maximum likelihood. A major feature is that any covariance function implemented in R with the fields interface can be used for spatial prediction. Some tailored optimization functions are supplied for find the MLEs for the Matern family of covariances. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of a sparse matrix methods for large data sets and currently requires the sparse matrix (spam) package for testing (but not for the standard spatial functions.) Use help(fields) to get started and for an overview. The fields source code is heavily commented and should provide useful explanation of numerical details in addition to the manual pages.

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Version

Install

install.packages('fields')

Monthly Downloads

43,868

Version

6.6.1

License

GPL (>= 2)

Maintainer

Douglas Nychka

Last Published

September 27th, 2011

Functions in fields (6.6.1)

CO2

Simulated global CO2 observations
ozone

Data set of ozone measurements at 20 Chicago monitoring stations.
ozone2

Daily 8-hour ozone averages for sites in the Midwest
image2lz

Some simple functions for subsetting images
RCMexample

3-hour precipitation fields from a regional climate model
predict.derivative

Predicted derivatives
rdist

Euclidean distance matrix
set.panel

Specify a panel of plots
flame

Response surface experiment ionizing a reagent
stats.bin

Bins data and finds some summary statistics.
summary.ncdf

Summarizes a netCDF file handle
colorbar.plot

Adds color scale strips to an existing plot.
world

Plot of the world
image.smooth

Kernel smoother for irregular 2-d data
fields

fields - tools for spatial data
tim.colors

Some useful color tables for images and tools to handle them.
vgram.matrix

Computes a variogram from an image
yline

Draw horizontal lines
Wimage.info

Finds key indices related to a 2-d multiresolution
plot.surface

Plots a surface
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
lennon

Gray image of John Lennon.
summary.Krig

Summary for Krig spatial process estimate
print.Krig

Print kriging fit results.
predict.se.Krig

Standard errors of predictions for Krig spatial process estimate
add.image

Adds an image to an existing plot.
krig.image

Spatial process estimate for large irregular 2-d dats sets.
plot.Wimage

Plots 2-d wavelet coefficents by level and type
predict.Krig

Evaluation of Krig spatial process estimate.
Krig.null.function

Default function to create fixed matrix part of spatial process model.
stats

Calculate summary statistics
quilt.plot

Image plot for irregular spatial data.
rdist.earth

Great circle distance matrix
Wtransform

Quadratic W wavelet transform for 1-d vectors or rectangular or cylindrical images
smooth.2d

Kernel smoother for irregular 2-d data
interp.surface

Fast bilinear interpolator from a grid.
pushpin

Adds a "push pin" to an existing 3-d plot
fields internal

Fields internal and secondary functions
predict.se

Standard errors of predictions
RMprecip

Monthly total precipitation (mm) for August 1963 in the Rocky Mountain Region and some gridded 4km elevation data sets.
transformx

Linear transformation
sim.Krig

Conditonal simulation of a spatial process
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
bplot.xy

Boxplots for conditional distribution
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
plot.Krig

Diagnostic and summary plots of a Kriging or spline object
poisson.cov

Poisson spherical covariance function
xline

Draw a vertical line
sim.rf

Simulates a random field
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
Wimage.cov

Functions for W-transform based covariance models
drape.plot

Perspective plot draped with colors in the facets.
surface.Krig

Plots a surface and contours
image.plot

Draws image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
fields.hints

fields - graphics hints
spam2lz

Conversion of formats for sparse matrices
as.surface

Creates an "surface" object from grid values.
splint

Cubic spline interpolation
Wimage.info.plot

Plot to check 2-d multiresolution indexing
fields.grid

Using MKrig for predicting on a grid.
Exponential, Matern, Radial Basis

Covariance functions
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
predict.surface

Evaluates a fitted function or its standard errors as a surface object
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
poly.image

Image plot for cells that are irregular quadrilaterals.
sreg

Smoothing spline regression
Tps

Thin plate spline regression
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
vgram

Finds a traditional or robust variogram for spatial data.
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
qsreg

Quantile or Robust spline regression
Krig

Kriging surface estimate
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
US.dat

Outline of coterminous US and states.
W.info

Gives indexing imfomration for a wavelet decompostion
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
fields-stuff

Fields supporting functions
minitri

Mini triathlon results
fields testing scripts

Testing fields functions
arrow.plot

Adds arrows to a plot
US

Plot of the US with state boundaries
Wendland

Wendland family of covariance functions and supporting numerical functions
rat.diet

Experiment studying an appetite supressant in rats.
as.image

Creates image from irregular x,y,z
bplot

boxplot
fields exported FORTRAN

FORTRAN subroutines used in fields functions