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fields (version 8.2-1)

Tools for Spatial Data

Description

Fields is for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging and compact covariances for large data sets. The splines and Kriging methods are supporting by functions that can determine the smoothing parameter (nugget and sill variance) by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to function that also estimates the correlation scale (range). A major feature is that any covariance function implemented in R and following a simple fields format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details in addition to the manual pages. The commented source code can be viewed by expanding the source code .tar.gz file and looking in R subdirectory.

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Version

Install

install.packages('fields')

Monthly Downloads

43,868

Version

8.2-1

License

GPL (>= 2)

Maintainer

Douglas Nychka

Last Published

February 28th, 2015

Functions in fields (8.2-1)

fields exported FORTRAN

FORTRAN subroutines used in fields functions
CO2

Simulated global CO2 observations
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
US.dat

Outline of coterminous US and states.
Krig.null.function

Default function to create fixed matrix part of spatial process model.
flame

Response surface experiment ionizing a reagent
xline

Draw a vertical line
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
fields internal

Fields internal and secondary functions
bplot.xy

Boxplots for conditional distribution
predict.surface

This older surface function has been renamed as predictSurface
plot.Krig

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.
print.Krig

Print kriging fit results.
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
as.surface

Creates an "surface" object from grid values.
Wendland

Wendland family of covariance functions and supporting numerical functions
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
mKrig.MLE

Maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a list of covariance models or a grid of covariance parameter values.
rdist.earth

Great circle distance matrix
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
vgram.matrix

Computes a variogram from an image
yline

Draw horizontal lines
US

Plot of the US with state boundaries
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
minitri

Mini triathlon results
rat.diet

Experiment studying an appetite supressant in rats.
bplot

boxplot
ozone2

Daily 8-hour ozone averages for sites in the Midwest
arrow.plot

Adds arrows to a plot
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
summary.Krig

Summary for Krig or spatialProcess estimated models.
predictSurface

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.
ozone

Data set of ozone measurements at 20 Chicago monitoring stations.
sim.rf

Simulates a Stationary Gaussian random field
fields testing scripts

Testing fields functions
fields.grid

Using MKrig for predicting on a grid.
lennon

Gray image of John Lennon.
add.image

Adds an image to an existing plot.
Exponential, Matern, Radial Basis

Covariance functions
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
image.smooth

Kernel smoother for irregular 2-d data
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
fields-stuff

Fields supporting functions
colorbar.plot

Adds color scale strips to an existing plot.
MLESpatialProcess

Estimates key covariance parameters for a spatial process.
summary.ncdf

Summarizes a netCDF file handle
Krig.replicates

Collapse repeated spatial locations into unique locations
image2lz

Some simple functions for subsetting images
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
poly.image

Image plot for cells that are irregular quadrilaterals.
RCMexample

3-hour precipitation fields from a regional climate model
predictSE

Standard errors of predictions for Krig spatial process estimate
qsreg

Quantile or Robust spline regression
transformx

Linear transformation
surface.Krig

Plots a surface and contours
world

Plot of the world
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
set.panel

Specify a panel of plots
fields.hints

fields - graphics hints
tim.colors

Some useful color tables for images and tools to handle them.
drape.plot

Perspective plot draped with colors in the facets.
as.image

Creates image from irregular x,y,z
rdist

Euclidean distance matrix
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
stats.bin

Bins data and finds some summary statistics.
smooth.2d

Kernel smoother for irregular 2-d data
stats

Calculate summary statistics
sim.Krig

Conditional simulation of a spatial process
vgram

Finds a traditional or robust variogram for spatial data.
quilt.plot

Image plot for irregular spatial data.
pushpin

Adds a "push pin" to an existing 3-d plot
splint

Cubic spline interpolation
QTps

Robust and Quantile smoothing using a thin-plate spline
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
Tps

Thin plate spline regression
plot.surface

Plots a surface
interp.surface

Fast bilinear interpolator from a grid.
image.plot

Draws image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
sreg

Cubic smoothing spline regression
spam2lz

Conversion of formats for sparse matrices
predict.Krig

Evaluation of Krig spatial process estimate.
spatialProcess

Estimates a spatial process model.
Krig

Kriging surface estimate
fields

fields - tools for spatial data