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fields (version 8.3-5)

Tools for Spatial Data

Description

For curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging and compact covariances for large data sets. The splines and Kriging methods are supporting by functions that can determine the smoothing parameter (nugget and sill variance) by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to function that also estimates the correlation scale (range). A major feature is that any covariance function implemented in R and following a simple fields format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details in addition to the manual pages. The commented source code can be viewed by expanding the source code .tar.gz file and looking in R subdirectory.

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Version

Install

install.packages('fields')

Monthly Downloads

46,615

Version

8.3-5

License

GPL (>= 2)

Maintainer

Douglas Nychka

Last Published

October 15th, 2015

Functions in fields (8.3-5)

rdist

Euclidean distance matrix or vector
plot.surface

Plots a surface
xline

Draw a vertical line
sim.rf

Simulates a Stationary Gaussian random field
supportsArg

Tests if function supports a given argument
stats

Calculate summary statistics
as.image

Creates image from irregular x,y,z
CO2

Simulated global CO2 observations
world

Plot of the world
as.surface

Creates an "surface" object from grid values.
sreg

Cubic smoothing spline regression
transformx

Linear transformation
Krig

Kriging surface estimate
RCMexample

3-hour precipitation fields from a regional climate model
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
US.dat

Outline of coterminous US and states.
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
print.Krig

Print kriging fit results.
CovarianceUpper

Evaluate covariance over upper triangle of distance matrix
image.smooth

Kernel smoother for irregular 2-d data
fields.hints

fields - graphics hints
fields exported FORTRAN

FORTRAN subroutines used in fields functions
predictSE

Standard errors of predictions for Krig spatial process estimate
fields testing scripts

Testing fields functions
qsreg

Quantile or Robust spline regression
bplot.xy

Boxplots for conditional distribution
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
mKrig.MLE

Maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a many covariance models or covariance parameter values.
image2lz

Some simple functions for subsetting images
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
fields

fields - tools for spatial data
vgram.matrix

Computes a variogram from an image
interp.surface

Fast bilinear interpolator from a grid.
yline

Draw horizontal lines
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
rdist.earth

Great circle distance matrix or vector
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
summary.Krig

Summary for Krig or spatialProcess estimated models.
flame

Response surface experiment ionizing a reagent
Krig.null.function

Default function to create fixed matrix part of spatial process model.
arrow.plot

Adds arrows to a plot
summary.ncdf

Summarizes a netCDF file handle
vgram

Traditional or robust variogram methods for spatial data
lennon

Gray image of John Lennon.
minitri

Mini triathlon results
spam2lz

Conversion of formats for sparse matrices
ozone2

Daily 8-hour ozone averages for sites in the Midwest
colorbar.plot

Adds color scale strips to an existing plot.
stats.bin

Bins data and finds some summary statistics.
pushpin

Adds a "push pin" to an existing 3-d plot
smooth.2d

Kernel smoother for irregular 2-d data
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
Exponential, Matern, Radial Basis

Covariance functions
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
drape.plot

Perspective plot draped with colors in the facets.
spatialProcess

Estimates a spatial process model.
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
rat.diet

Experiment studying an appetite supressant in rats.
surface.Krig

Plots a surface and contours
fields internal

Fields internal and secondary functions
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
quilt.plot

Image plot for irregular spatial data.
Chicago ozone test data

Data set of ozone measurements at 20 Chicago monitoring stations.
fields.grid

Using MKrig for predicting on a grid.
US

Plot of the US with state boundaries
fields-stuff

Fields supporting functions
tim.colors

Some useful color tables for images and tools to handle them.
Wendland

Wendland family of covariance functions and supporting numerical functions
predict.Krig

Evaluation of Krig spatial process estimate.
poly.image

Image plot for cells that are irregular quadrilaterals.
Krig.replicates

Collapse repeated spatial locations into unique locations
sim.Krig

Conditional simulation of a spatial process
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
plot.Krig

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
image.plot

Draws image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
bplot

boxplot
QTps

Robust and Quantile smoothing using a thin-plate spline
splint

Cubic spline interpolation
add.image

Adds an image to an existing plot.
MLESpatialProcess

Estimates key covariance parameters for a spatial process.
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
Tps

Thin plate spline regression
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
set.panel

Specify a panel of plots
predictSurface

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.
compactToMat

Convert Matrix from Compact Vector to Standard Form