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fields (version 9.8-6)

Tools for Spatial Data

Description

For curve, surface and function fitting with an emphasis on splines, spatial data, geostatistics, and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and compactly supported covariance functions for large data sets. The splines and Kriging methods are supported by functions that can determine the smoothing parameter (nugget and sill variance) and other covariance function parameters by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to use function that also estimates the correlation scale (range parameter). A major feature is that any covariance function implemented in R and following a simple format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details as a companion to the manual pages. The commented source code can be viewed by expanding source code version and looking in the R subdirectory. The reference for fields can be generated by the citation function in R and has DOI . Development of this package was supported in part by the National Science Foundation Grant 1417857 and the National Center for Atmospheric Research. See the Fields URL for a vignette on using this package and some background on spatial statistics.

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Install

install.packages('fields')

Monthly Downloads

43,185

Version

9.8-6

License

GPL (>= 2)

Issues

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Maintainer

Douglas Nychka

Last Published

August 19th, 2019

Functions in fields (9.8-6)

Exponential, Matern, Radial Basis

Covariance functions
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
Krig.null.function

Default function to create fixed matrix part of spatial process model.
CovarianceUpper

Evaluate covariance over upper triangle of distance matrix
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
CO2

Simulated global CO2 observations
fields exported FORTRAN

FORTRAN subroutines used in fields functions
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
Krig

Kriging surface estimate
RCMexample

3-hour precipitation fields from a regional climate model
MLESpatialProcess

Estimates key covariance parameters for a spatial process.
Krig.replicates

Collapse repeated spatial locations into unique locations
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
QTps

Robust and Quantile smoothing using a thin-plate spline
Tps

Thin plate spline regression
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
US

Plot of the US with state boundaries
US.dat

Outline of coterminous US and states.
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
as.surface

Creates an "surface" object from grid values.
compactToMat

Convert Matrix from Compact Vector to Standard Form
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
Wendland

Wendland family of covariance functions and supporting numerical functions
colorbar.plot

Adds color scale strips to an existing plot.
as.image

Creates image from irregular x,y,z
add.image

Adds an image to an existing plot.
arrow.plot

Adds arrows to a plot
bplot.xy

Boxplots for conditional distribution
bplot

boxplot
fields.grid

Using MKrig for predicting on a grid.
fields.hints

fields - graphics hints
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
drape.plot

Perspective plot draped with colors in the facets.
fields

fields - tools for spatial data
fields-stuff

Fields supporting functions
flame

Response surface experiment ionizing a reagent
fields testing scripts

Testing fields functions
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
fields internal

Fields internal and secondary functions
mKrig.MLE

Maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a many covariance models or covariance parameter values.
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
interp.surface

Fast bilinear interpolator from a grid.
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
image2lz

Some simple functions for subsetting images
image.smooth

Kernel smoother for irregular 2-d data
mKrigMLE

Maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a many covariance models or covariance parameter values.
minitri

Mini triathlon results
plot.Krig

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.
plot.surface

Plots a surface
print.Krig

Print kriging fit results.
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
lennon

Gray image of John Lennon.
pushpin

Adds a "push pin" to an existing 3-d plot
quilt.plot

Image plot for irregular spatial data.
qsreg

Quantile or Robust spline regression
image.plot

Draws an image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
poly.image

Image plot for cells that are irregular quadrilaterals.
rdist.earth

Great circle distance matrix or vector
predict.Krig

Evaluation of Krig spatial process estimate.
registeringCode

Information objects that register C and FORTRAN functions.
Chicago ozone test data

Data set of ozone measurements at 20 Chicago monitoring stations.
smooth.2d

Kernel smoother for irregular 2-d data
predictSE

Standard errors of predictions for Krig spatial process estimate
ozone2

Daily 8-hour ozone averages for sites in the Midwest
stats

Calculate summary statistics
transformx

Linear transformation
sreg

Cubic smoothing spline regression
summary.Krig

Summary for Krig or spatialProcess estimated models.
summary.ncdf

Summarizes a netCDF file handle
stats.bin

Bins data and finds some summary statistics.
spam2lz

Conversion of formats for sparse matrices
rat.diet

Experiment studying an appetite supressant in rats.
spatialProcess

Estimates a spatial process model.
vgram

Traditional or robust variogram methods for spatial data
predictSurface

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.
supportsArg

Tests if function supports a given argument
rdist

Euclidean distance matrix or vector
yline

Draw horizontal lines
xline

Draw a vertical line
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
sim.spatialProcess

Conditional simulation of a spatial process
surface.Krig

Plots a surface and contours
tim.colors

Some useful color tables for images and tools to handle them.
set.panel

Specify a panel of plots
sim.rf

Simulates a Stationary Gaussian random field
splint

Cubic spline interpolation
vgram.matrix

Computes a variogram from an image
world

Plot of the world