This is a dummy function whose purpose is to serve as repository for arguments used by figuRes2 functions.
graphic.params(
add.fignum,
addBars,
addTime,
at.risk.palette,
background.palette,
bar.position,
bar.width,
base_family,
base_size,
bottom.axis.version,
bottom.margin,
category,
category.color,
category.col,
category.label,
category.symbol.col,
category.palette,
cd,
censor.col,
centime.col,
dd,
envir,
fignum,
fignum.buffer,
filename,
flip.palette,
fnote,
fnote.buffer,
foot.size,
fromthetop,
gg.list,
head.size,
header.buffer,
interior,
interior.h,
interior.w,
killMissing,
left.margin,
linetype.col,
line.size,
linetype.palette,
loadplan,
logd,
log.trans,
lower.lim,
main.theme,
my.path,
ncol,
nrow,
nsubj.plot.label,
od,
outfile,
override,
page.height,
page.width,
parent.df,
pdval,
Point.Est,
pos,
reportNR,
response.col,
right.margin,
shape.label,
shape.palette,
source.code,
text.buffer,
test.dim,
text.col,
text.col1,
text.col2,
text.col3,
text.col4,
text.size,
title,
title.buffer,
title.size,
toBMP,
toEPS,
toJPEG,
top.axis.version,
top.margin,
toPDF,
toPNG,
toWMF,
ulh,
upper.lim,
urh,
UseSubset,
x.col,
x.label,
x.limits,
x.ticks,
x.ticks.labels,
y.col,
y.digits,
y.label,
y.label.col,
y.label.rank.col,
y.limits,
y.rank.col,
y.ticks,
ymax.col,
ymin.col
)This function is just a convenient location to store argument names.
logical (annotate.page)
logical to add error bars (line.plot)
logical for ading time stamp (annotate.page)
colors to be assocated with categorical variable in accompanying km.plot generated at.risk table
palette gets passed to scale_fill_manual (forest.plot)
passed to geom_bar (bar.plot)
used by line.plot
used in set_theme calls
used in set_theme calls
ggplot object with bottom x-axis (get.top.xaxis)
used by build.page and annotate.page
option to add a column populated with a factor (by gcurve)
data.frame column assocated with aes color mapping (forest.plot, line.plot, nsubj.plot, table.plot)
data.frame column associated with categorical variable (bar.plot, box.plot, cdf.plot, dot.plot, km.plot)
passed to x-axis label
used by line.plot
colors assoicated with categorical variable
directory where driver (code) files are stored
name of parent.df column associated with censor variable
name of parent.df column associated with censored time
directory where data is stored
used internally by some functions
figure number (annotate.page)
fine-control of vertical position (annotate.page)
common_root.pdf or common_root.csv
logical; if TRUE it reverse the order of colors used for background (forest.plot)
vector of 5 footnotes. 5th row is traditionally reserved for filepath, table reference and time stamp. Populate from bottom up. (annotate.page)
fine-control of vertical position (annotate.page)
default: 10; passed to grid.text via gp (annotate.page)
logical. If TRUE KM curve decends from 1, if FALSE KM curve ascends from 0 Ensure you have an appropriate censor.col passed above!
a list of ggplot objects (sync.ylab.widths)
default: 10 (anotate.page)
fine-control of vertical position (anotate.page)
a list of nrow*ncol grobs/ggplot objects to be displayed in the grid, ordered by row then col (build.page)
a vector summing to 1 to indicate how to partition the heights (build.page)
a vector summing to 1 to indicate how to partition the widths (build.page)
logical used by bar.plot
used by build.page and annotate.page; presumed to be inches
name of parent.df column associated with linetype
value gets passed to size within geom_line, geom_step
values passed to scale_linetype_manual
logical; if TRUE then it loads from the filename
directory where log files are sent
Logical; if TRUE log transformation is applied to x axis (ensure x.limits are positive!) (forest.plot)
column holding lower limit of CI
text string name of theme to be called by theme_set,
path to main directory,
number of columns for the grid of graphics being built by build.page
number of rows for the grid of graphics being built by build.page
used in km.plot
directory where output files are sent
If (toPDF== TRUE & outfile == "") a .pdf file with root name taken from outputplan$outfile[which(outputplan$rcode ==source.code)]. Otherwise a .pdf will be created the value of outfile. The pdf is stored in mypath/od defined in setpaths.r.
override
used by build.page and annotate.page; presumed to be inches
used by build.page and annotate.page; presumed to be inches
data.frame used by ggplot
value passed to position_dodge (lineplot)
point estimate
used internally by some functions
If TRUE, a plot with missing figure numbers and titles is produced
used by cdf.plottttt
used by build.page and annotate.page; presumed to be inches
value sets passed to labs
values passed to scale_shape_manual
This is intended to be a darapladib graphics driver file returning a graphic possibly with complete headers and footers.
used by bar.plot to control text placement
logical. Assists with figure development. If TRUE it makes a call to grid.show.layout.
used by nsubj.plot
name of column holding text for column 1 (table.plot)
name of column holding text for column 2; can be NULL (table.plot)
name of column holding text for column 3; can be NULL (table.plot)
name of column holding text for column 4; can be NULL (table.plot)
value gets passed to geom_text
vector of title lines (annotate.page)
fine-control of vertical position (annotate.page)
default: 14; passed to grid.text via gp (annotate.page)
Logical. If TRUE a .bmp file will be created. (run.specific)
Logical. If TRUE a .eps file will be created. (run.specific)
Logical. If TRUE a .jpeg file will be created. (run.specific)
ggplot object with intended top x-axis in bottom position (get.top.xaxis)
used by build.page and annotate.page; presumed to be inches
Logical. If TRUE a .pdf file will be created. If FALSE graphic is sent to screen. (run.specific)
Logical. If TRUE a .png file will be created. (run.specific)
Logical. If TRUE a .wmf file will be created. (run.specific)
vector for upper left headers (annotate.page)
column holding upper limit of CI (forest.plot)
vector for upper right headers (annotate.page)
Corresponds to a column name in outputplan holding flags (all_in_one)
parent.df column associated with response vairable (line.plot, nsubj.plot)
value gets passed to labs
value gets passed to scale_x_continuous
value gets passed to scale_x_continuous
passed to scale_x_continuous
parent.df column associated with response vairable
passed to scale_y_continuous label's, fmt (box.plot, line.plot)
value gets passed to labs
column holding labels for forest/dot/table plots
column holding ranks for labels in forest/dot/table plots
passed to scale_y_continuous
column holding ranks for line items in forest/dot/table plots
passed to scale_y_continuous
name of parent.df column associated with ymax (line.plot errorbars)
name of parent.df column associated with ymin (line.plot errorbars)
Greg Cicconetti