initial_count_recover_raw

This function recovers the initial raw k-mer count, making the k-mer frequency consecutive.

Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.

Laiyi Fu

findGSEP

Estimate Genome Size of Polyploid Species Using k-Mer
Frequencies

initial_count_recover_raw function

<dl><dt>d0</dt>
<dd>A data frame representing the initial raw k-mer count from software like Jellyfish.</dd></dl>

Arguments

Recover Initial Raw K-mer Count — initial_count_recover_raw

<dl>

<dt>d0</dt>
<dd>A data frame representing the initial raw k-mer count from software like Jellyfish.</dd>

</dl>

initial_count_recover_raw: Recover Initial Raw K-mer Count

Description

Usage

Value

Arguments

Examples