shannon

entropy

A list structure with each element being an object of class
	<code>fingerprint</code>. These will can be constructed by hand or
	read from disk via <code><a rd-options="" href="/link/fp.read?package=fingerprint&version=3.5.7" data-mini-rdoc="fingerprint::fp.read">fp.read</a></code>.
All fingerprints in the list should be of the same length.

fplist

This method evaluates the Shannon entropy for a set of fingerprints
and utilizes the <code><a rd-options="" href="/link/bit.spectrum?package=fingerprint&version=3.5.7" data-mini-rdoc="fingerprint::bit.spectrum">bit.spectrum</a></code> method to obtain the relative
frequencies of individual bits

programming

Functions to manipulate binary fingerprints
of arbitrary length. A fingerprint is represented by an object of S4 class 'fingerprint'
which is internally represented a vector of integers, such
that each element represents the position in the fingerprint that is set to 1.
The bitwise logical functions in R are overridden so that they can be used directly
with 'fingerprint' objects. A number of distance metrics are also
available (many contributed by Michael Fadock). Fingerprints
can be converted to Euclidean vectors (i.e., points on the unit hypersphere) and
can also be folded using OR.  Arbitrary fingerprint formats can be handled via line
handlers. Currently handlers are provided for CDK, MOE and BCI fingerprint data.

Rajarshi Guha

fingerprint

Functions to Operate on Binary Fingerprint Data

shannon function

A list structure with each element being an object of class
	<code>fingerprint</code>. These will can be constructed by hand or
	read from disk via <code><a rd-options='' href='fp.read'>fp.read</a></code>.
All fingerprints in the list should be of the same length.

This method evaluates the Shannon entropy for a set of fingerprints
and utilizes the <code><a rd-options='' href='bit.spectrum'>bit.spectrum</a></code> method to obtain the relative
frequencies of individual bits

shannon: Evaluate Shannon Entropy for a Set of Fingerprints

Description

Usage

Arguments

Value

See Also