fishflux (version 0.0.1.6)

extract: A function to extract specific model output parameters from result

Description

A function to extract specific model output parameters from result

Usage

extract(mod, par)

Arguments

mod

Output from cnp_mod_mcmc()

par

Character vector specifying which output parameter that should be returned.

Value

Main model output parameters:

• F0c: C-specific minimal inorganic flux (g/day)

• F0n: N-specific minimal inorganic flux (g/day)

• F0p: P-specific minimal inorganic flux (g/day)

• Gc: Carbon-specific growth rate (g/day)

• Gn: Nitrogen-specific growth rate (g/day)

• Gp: Phosphorus-specific growth rate (g/day)

• Sc: C-specific minimal supply rate (g/day)

• Sn: N-specific minimal supply rate (g/day)

• Sp: P-specific minimal supply rate (g/day)

• Ic: Ingestion rate of C (g/day)

• In: Ingestion rate of N (g/day)

• Ip: Ingestion rate of P (g/day)

• Wc: Egestion rate of C (g/day)

• Wn: Egestion rate of N (g/day)

• Wp: Egestion rate of P (g/day)

• Fc: Total inorganic flux of C (respiration) (g/day)

• Fn: Total inorganic flux of N (excretion) (g/day)

• Fp: Total inorganic flux of P (excretion) (g/day)

Returns a data.frame with a summary of the selected output parameters

Examples

# NOT RUN {
model <- cnp_model_mcmc(TL = 5:10, param = list(Qc_m = 40, Qn_m = 10, Qp_m = 4))
extract(model, c("Fn","Fp"))

# }