Learn R Programming

fishmethods (version 1.9-0)

bheq1: Length-based Beverton-Holt Equilibrium Total Instantaneous Mortality Estimator

Description

The equilibrium Beverton-Holt estimator of instantaneous total mortality (Z) from length data with bootstrapped standard errors

Usage

bheq1(len, K = NULL, Linf = NULL, Lc = NULL, nboot = 100)

Arguments

len
the vector of length data. Each row represents one record per individual fish.
K
the growth coefficient from a von Bertalanffy growth model.
Linf
the L-infinity coefficient from a von Bertalanffy growth model.
Lc
the length at first capture.
nboot
the number of bootstrap runs. Default=100.

Value

Details

The standard Beverton-Holt equilibrium estimator of instantaneous total mortality (Z) from length data (page 365 in Quinn and Deriso (1999)) is calculated. The mean length for lengths >=Lc is calculated automatically. Missing data are removed prior to calculation. Estimates of standard error are made by bootstrapping length data >=Lc using package boot.

References

Quinn, T. J. and R. B. Deriso. 1999. Quantitative Fish Dynamics. Oxford University Press, New York, New York. 542 pages

See Also

bheq2 bhnoneq

Examples

Run this code
bheq1(pinfish$sl,K=0.33,Linf=219.9,Lc=120,nboot=200)

Run the code above in your browser using DataLab