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fitPoly (version 3.0.0)

Genotype Calling for Bi-Allelic Marker Assays

Description

Genotyping assays for bi-allelic markers (e.g. SNPs) produce signal intensities for the two alleles. 'fitPoly' assigns genotypes (allele dosages) to a collection of polyploid samples based on these signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011) .

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Version

Install

install.packages('fitPoly')

Monthly Downloads

254

Version

3.0.0

License

GPL-2

Maintainer

Roeland Voorrips

Last Published

March 16th, 2018

Functions in fitPoly (3.0.0)

Function to fit a multiple mixture model to a vector of signal ratios of a single bi-allelic marker

convertStartmeans

A function to convert a set of mixture means from one ploidy to another

saveMarkerModels

Function to fit mixture models for series of markers and save the results to files

Function to fit multiple mixture models to signal ratios of a single bi-allelic marker

fitPoly: a package for assigning dosage scores based on SNP array data

Small fitPoly input datasets for testing and examples