For markers where the segregation type in the F1 is known but the parental consensus scores are missing, this function generates multiple versions of the marker, each with a different combination of parental scores matching the segregation and a different suffix to the marker name.
expandUnknownParents(scores, sep="@",
polysomic=TRUE, disomic=FALSE, mixed=FALSE,
ploidy, ploidy2, scorefile)A data frame with the same format and contents as parameter scores, with each marker where parental scores were missing expanded to multiple rows, one per parental dosage combination
a data frame as returned by writeDosagefile, or the combscores item in the return value of compareProbes or removeRedundant
a short string (one or more characters, default "@") to separate the original marker name from the consecutive letters (a, b, c etc) that identify the different versions of the marker. Markers that already have parental scores are not modified
TRUE or FALSE; should be the same as used by checkF1
TRUE or FALSE; should be the same as used by checkF1
TRUE or FALSE; should be the same as used by checkF1
the ploidy of parent 1 (must be even, 2 (diploid) or larger), and the same as used by checkF1
the ploidy of parent 2. If omitted it is assumed to be equal to ploidy. Should be the same as used by checkF1
a filename to which the result is written; if NA no file is written